>SSF493 (SSF493Q) /CSM/SS/SSF4-D/SSF493Q.Seq.d/
XXXXXXXXXXTTAATATTTTAAGATAAATCATTGTTTATTAAATCCAATAAACTATATTA
TTTTATAATTTATAAAAAAAAAGTCAAATATCTCCAAACTCGTCTCTATTGGTCTTTATC
TTTCTTTAAAAACTTAAATCATTGTTTACAAATTGCAGTAAACAACATTTCGTTACAGTT
AAGGGAAATAATATTCAAAAGAACAAACAAAAACAAAAACAACAACAGCAACAACAAATT
CTTTCAAACTTGTCTCTCATGTGCTGTCTCTTTTCTTTAAAAACTTAAATCACAGTTTAC
AAATTGCAGTAAACTATATTTCGTTACAATCAAAGGAAAAAATGGTGCAAAGAACAAAAA
TAAAAAGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAATTCTTTCAAACTTGTTTCTCNTTCGCTGTCTCTTTTCTTTAATAACTTAAACCATAG
TTTACAAATTGCAGTAAACTACATTTCGTTATAATAAAATTAAAAAATAGTGGTAAGAAA
CAACAACAAAAAGAAGNACAAAAAATTAATAAATTTAATNTTTTACGTCTCTTATGAGAT
TTAATTTAAAA

---*yfkinhcllnpinyiil*fikkksnisklvsiglylslkt*iivyklq*ttfrys*
gk*YSKEQTKTKTTTATTNSFKLVSHVLSLFFKNLNHSLQIAVNYISLQSKEKMVQRTKI
KRTTTTTTTTTTTTTTTTTTILSNLFLXRCLFSLIT*tivyklq*ttfrynkikk*w*et
ttkrxtkn**i*xftslmrfnlk

Frame A:
---*yfkinhcllnpinyiil*fikkksnisklvsiglylslkt*iivyklq*ttfrys*
gk*YSKEQTKTKTTTATTNSFKLVSHVLSLFFKNLNHSLQIAVNYISLQSKEKMVQRTKI
KRTTTTTTTTTTTTTTTTTTILSNLFLXRCLFSLIT*tivyklq*ttfrynkikk*w*et
ttkrxtkn**i*xftslmrfnlk


Frame B:
---nilr*iivy*iq*tilfynl*kksqispnssllvfifl*klkslftncskqhfvtvk
gnniqknkqkqkqqqqqqilsnlslmcclfslkt*itvyklq*tifrynqrkkwckeqk*
keqqqqqqqqqqqqqqqqqqffqtcfsfavsfl**lkp*ftncsklhfviiklknsgkkq
qqkexqkinkfnxlrll*dli*


Frame C:
---if*dkslfiksnklyyfiiykkkvkylqtrlywslsffknlnhclqiavnnislqlr
eiifkrtnknknnnsnnkffqtclscavsfl*klksqftncsklyfvtikgkngaknknk
knnnnnnnnnnnnnnnnnnnsfklvsxslslffnnlnhslqiavnyisl**n*kivvrnn
nkkkxkklinlxfyvsyei*fk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK650 (SSK650Q) /CSM/SS/SSK6-C/SSK650Q.Seq.d/                        313   2e-84
SSF493 (SSF493Q) /CSM/SS/SSF4-D/SSF493Q.Seq.d/                        313   2e-84
SSE802 (SSE802Q) /CSM/SS/SSE8-A/SSE802Q.Seq.d/                        313   2e-84
SSM140 (SSM140Q) /CSM/SS/SSM1-B/SSM140Q.Seq.d/                        309   3e-83
VSH261 (VSH261Q) /CSM/VS/VSH2-C/VSH261Q.Seq.d/                        307   1e-82
SSF315 (SSF315Q) /CSM/SS/SSF3-A/SSF315Q.Seq.d/                        303   2e-81
SSL534 (SSL534Q) /CSM/SS/SSL5-B/SSL534Q.Seq.d/                        299   3e-80
VSJ521 (VSJ521Q) /CSM/VS/VSJ5-A/VSJ521Q.Seq.d/                        256   3e-67
VSI138 (VSI138Q) /CSM/VS/VSI1-B/VSI138Q.Seq.d/                        256   3e-67
VSB240 (VSB240Q) /CSM/VS/VSB2-B/VSB240Q.Seq.d/                        256   3e-67

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    34   0.005  11
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    32   0.017  10
BX276096|BX276096.4 Zebrafish DNA sequence from clone CH211-240J18 in linkage group 5.    38   0.030  7
AX348594|AX348594.1 Sequence 52 from Patent WO0202807.             38   0.036  6
AX281384|AX281384.1 Sequence 48 from Patent WO0177376.             38   0.036  6
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    36   0.074  9
BX321890|BX321890.5 Zebrafish DNA sequence from clone CH211-258D5 in linkage group 5.    36   0.14   6
BX572091|BX572091.1 Prochlorococcus marinus MED4 complete genome; segment 2/5.    40   0.14   11
AC084378|AC084378.3 Homo sapiens chromosome 4 clone RP11-710D11, WORKING DRAFT SEQUENCE, 37 unordered pieces.    36   0.19   7
AC095704|AC095704.6 Rattus norvegicus clone CH230-9B23, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   0.26   3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 526,523,638

 psg: 0.82  gvh: 0.36  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSF493 is cyt

>SSF493Z.Seq
----------TTAATATTTTAAGATAAATCATTGTTTATTAAATCCAATAAACTATATTA
TTTTATAATTTATAAAAAAAAAGTCAAATATCTCCAAACTCGTCTCTATTGGTCTTTATC
TTTCTTTAAAAACTTAAATCATTGTTTACAAATTGCAGTAAACAACATTTCGTTACAGTT
AAGGGAAATAATATTCAAAAGAACAAACAAAAACAAAAACAACAACAGCAACAACAAATT
CTTTCAAACTTGTCTCTCATGTGCTGTCTCTTTTCTTTAAAAACTTAAATCACAGTTTAC
AAATTGCAGTAAACTATATTTCGTTACAATCAAAGGAAAAAATGGTGCAAAGAACAAAAA
TAAAAAGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAATTCTTTCAAACTTGTTTCTCNTTCGCTGTCTCTTTTCTTTAATAACTTAAACCATAG
TTTACAAATTGCAGTAAACTACATTTCGTTATAATAAAATTAAAAAATAGTGGTAAGAAA
CAACAACAAAAAGAAGNACAAAAAATTAATAAATTTAATNTTTTACGTCTCTTATGAGAT
TTAATTTAAAA