>SSF479 (SSF479Q) /CSM/SS/SSF4-D/SSF479Q.Seq.d/
XXXXXXXXXXCCAAGATTATGACTTAAATAAGGATTACAGTGTAACTTCATCTGAAATAT
ATCAATCATTTTTAAAAAAAATGAATGGTGATAGTTTAAAGGCATCACAGGCAGCTGGTG
TTTTATGTTCAACAGTTGATATGGACAATGATGGTAAATTCAGTTATTATGAAATTTCTA
AATATTGTGCAGACCAGGCAAAAAAACAAATTGAACAAAATGCTGAGACTGCTGCATTGG
CTGATGTCGAAGCATTGTTATTAAGACTTGATAAAGATAAGGATAAAAAATTAAACAAAA
CAGAATTTGTTAAATTCTTTAAAGAACAGGGCTATAATCCATACTCTGACCCTGATTATG
TTCTTAAAATTATTGATTTGGATAAAGATGGATATGTTTCCGCAAGTGAATTACAAGAAT
GGTTCAAACAAAAAAGATTGGCTTATGCAAGAGGTCCAATTTGTTAAATTCTCTTGGGAC
AAAATACCACATTAATCTTATTTTTTAAGGTTTTTAAATTTGGTACAAAAAAATAAAAAT
TAAATAAATATTCAANTTCCATTGTCCAAAAAAAAAAAAAAAAAAA

---QDYDLNKDYSVTSSEIYQSFLKKMNGDSLKASQAAGVLCSTVDMDNDGKFSYYEISK
YCADQAKKQIEQNAETAALADVEALLLRLDKDKDKKLNKTEFVKFFKEQGYNPYSDPDYV
LKIIDLDKDGYVSASELQEWFKQKRLAYARGPIC*illgqnttlilffkvfkfgtkk*kl
nkysxsivqkkkkk

Frame A:
---QDYDLNKDYSVTSSEIYQSFLKKMNGDSLKASQAAGVLCSTVDMDNDGKFSYYEISK
YCADQAKKQIEQNAETAALADVEALLLRLDKDKDKKLNKTEFVKFFKEQGYNPYSDPDYV
LKIIDLDKDGYVSASELQEWFKQKRLAYARGPIC*illgqnttlilffkvfkfgtkk*kl
nkysxsivqkkkkk


Frame B:
---kimt*iritv*lhlkyinhf*kk*mviv*rhhrqlvfyvqqliwtmmvnsvimkfln
ivqtrqknklnkmlrllhwlmskhcy*dlikirikn*tkqnllnslknraiihtltlimf
lklliwikmdmfpqvnykngsnkkdwlmqevqfvkfswdkiph*syflrflnlvqknkn*
iniqxplskkkkkk


Frame C:
---rl*lk*glqcnfi*nisiifkknew**fkgitgswcfmfns*ygq*w*iqll*nf*i
lcrpgkktn*tkc*dccig*crsivikt**r*g*kikqnric*il*rtgl*sil*p*lcs
*ny*fg*rwicfrk*itrmvqtkkiglckrsnllnslgtkyhinlif*gf*iwykkikik
*ifxfhcpkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM536 (SSM536Q) /CSM/SS/SSM5-B/SSM536Q.Seq.d/                        934   0.0
SSM254 (SSM254Q) /CSM/SS/SSM2-C/SSM254Q.Seq.d/                        934   0.0
SSM207 (SSM207Q) /CSM/SS/SSM2-A/SSM207Q.Seq.d/                        934   0.0
SSK215 (SSK215Q) /CSM/SS/SSK2-A/SSK215Q.Seq.d/                        934   0.0
SSJ883 (SSJ883Q) /CSM/SS/SSJ8-D/SSJ883Q.Seq.d/                        934   0.0
SSI258 (SSI258Q) /CSM/SS/SSI2-C/SSI258Q.Seq.d/                        934   0.0
SSF479 (SSF479Q) /CSM/SS/SSF4-D/SSF479Q.Seq.d/                        934   0.0
SSF123 (SSF123Q) /CSM/SS/SSF1-A/SSF123Q.Seq.d/                        934   0.0
SSE532 (SSE532Q) /CSM/SS/SSE5-B/SSE532Q.Seq.d/                        934   0.0
SSD683 (SSD683Q) /CSM/SS/SSD6-D/SSD683Q.Seq.d/                        928   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB070449|AB070449.1 Dictyostelium discoideum cbpG mRNA for calcium binding protein CBP7, complete cds, clone:SSM207.   634   0.0    4
AB070448|AB070448.1 Dictyostelium discoideum cbpF mRNA for calcium binding protein CBP6, complete cds, clone:SSA631.   252   e-144  4
AF076972|AF076972.1 Dictyostelium discoideum calcium-binding protein mRNA, complete cds.   163   e-111  4
AP003193|AP003193.2 Clostridium perfringens DNA, complete genome, section 9/10.    34   2e-04  13
AF303741|AF303741.1 Chilo iridescent virus complete genome.        36   7e-04  9
CG927655|CG927655.1 MBEDP62TRC mth2 Medicago truncatula genomic clone 33L4, genomic survey sequence.    40   0.002  3
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    30   0.002  11
AL117340|AL117340.3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains STSs, GSSs and CpG Islands.    38   0.004  7
AB063522|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2.    36   0.010  12
AX344565|AX344565.1 Sequence 16 from Patent WO0200932.             32   0.010  12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QT9) RecName: Full=Calcium-binding protein F; AltName: Full=...   203   2e-51
(Q54QU0) RecName: Full=Calcium-binding protein F-like; AltName: ...   201   1e-50
(Q54QT7) RecName: Full=Calcium-binding protein C; AltName: Full=...   189   6e-47
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    45   0.001
(Q2TBI5) RecName: Full=Calcineurin subunit B type 2; AltName: Fu...    40   0.035
AY336971_1(AY336971|pid:none) Xenopus laevis protein phospatase ...    39   0.10
AB375794_1(AB375794|pid:none) Bos taurus mRNA for calcineurin B,...    39   0.13
JC1220(JC1220) calcineurin regulatory chain, brain - mouse  &S43...    39   0.13
D14425_1(D14425|pid:none) Rattus sp. mRNA for calcineurin B, com...    39   0.13
CU640366_1300(CU640366|pid:none) Podospora anserina genomic DNA ...    38   0.17

 psg: 0.75  gvh: 0.41  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSF479 is cyt

>SSF479Z.Seq
----------CCAAGATTATGACTTAAATAAGGATTACAGTGTAACTTCATCTGAAATAT
ATCAATCATTTTTAAAAAAAATGAATGGTGATAGTTTAAAGGCATCACAGGCAGCTGGTG
TTTTATGTTCAACAGTTGATATGGACAATGATGGTAAATTCAGTTATTATGAAATTTCTA
AATATTGTGCAGACCAGGCAAAAAAACAAATTGAACAAAATGCTGAGACTGCTGCATTGG
CTGATGTCGAAGCATTGTTATTAAGACTTGATAAAGATAAGGATAAAAAATTAAACAAAA
CAGAATTTGTTAAATTCTTTAAAGAACAGGGCTATAATCCATACTCTGACCCTGATTATG
TTCTTAAAATTATTGATTTGGATAAAGATGGATATGTTTCCGCAAGTGAATTACAAGAAT
GGTTCAAACAAAAAAGATTGGCTTATGCAAGAGGTCCAATTTGTTAAATTCTCTTGGGAC
AAAATACCACATTAATCTTATTTTTTAAGGTTTTTAAATTTGGTACAAAAAAATAAAAAT
TAAATAAATATTCAANTTCCATTGTCCAAAAAAAAAAAAAAAAAAA