>SSF475 (SSF475Q) /CSM/SS/SSF4-D/SSF475Q.Seq.d/
XXXXXXXXXXTCTCAACTCAAGGTCGTGGTGATCATGATCAATGGGTAACTTCATACAAA
TTAAGATACACACTTGATAATGTAAACTGGGTTGAATATAACAATGGTGAAATAATCAAT
GCCAATAAAGATAGAAATTCAATTGTTACAATCAACTTTAATCCACCAATTAAAGCTAGA
TCTATTGCCATTCATCCTCAAACCTATNATAATCATATTTCACTTCGTTGGGAATTATAT
GCATTACCAGTTAAAAGTTATTCAAATCCATCAGTCCAAGTTGGTGAAGTTTCAATTGGT
GATAGATCTCTTAACAGTGGTACTGGTTCACGTACGATTGTTCGTCACGTTAAATTCCCA
GTGGAATTCCTTTCTGTTCCAATCGTATCANTNGGTTGTAAAAAAGTTGATGCACATACT
GATAATGGTCAAATGAGATGGGAAGGTAAATCTGAAAATATTACTACAAAAGGTTTTGAT
TTAACTTTTATTACATGGGGTAATAATGCAGTTTATGATTTAACTTTTGATTATGTTGCT
GTTGAATTTAATAATTAAATAATTAAATAATAAAATAAATAAATAAATTTATTTGTTTTT
ATTTTATATTTTAAAATAAAAAAAAAAAAAAA

---STQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSIVTINFNPPIKARS
IAIHPQTYXNHISLRWELYALPVKSYSNPSVQVGEVSIGDRSLNSGTGSRTIVRHVKFPV
EFLSVPIVSXGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGNNAVYDLTFDYVAV
EFNN*iik**nk*inlfvfilyfkikkkk

Frame A:
---lnsrsw*s*smgnfiqikiht**cklg*i*qw*nnqcq*r*kfncynql*stn*s*i
ychsssnlx*syftslgiicits*klfksispsw*sfnw**is*qwywftydcssr*ips
gipfcsnrixxl*ks*cty**wsnemgr*i*kyyykrf*fnfyymg**csl*fnf*lccc
*i**lnn*iik*inkficfyfif*nkkkkk


Frame B:
---STQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSIVTINFNPPIKARS
IAIHPQTYXNHISLRWELYALPVKSYSNPSVQVGEVSIGDRSLNSGTGSRTIVRHVKFPV
EFLSVPIVSXGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGNNAVYDLTFDYVAV
EFNN*iik**nk*inlfvfilyfkikkkk


Frame C:
---qlkvvviming*lhtn*dthlim*tglnitmvk*smpikieiqllqstlihqlkldl
lpfilkpxiiifhfvgnymhyqlkviqihqsklvkfqlvidlltvvlvhvrlfvtlnsqw
nsflfqsyxxvvkklmhilimvk*dgkvnlkillqkvli*lllhgvimqfmi*llimlll
nliik*lnnkink*iylflfyilk*kkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF475 (SSF475Q) /CSM/SS/SSF4-D/SSF475Q.Seq.d/                       1041   0.0
SSF761 (SSF761Q) /CSM/SS/SSF7-C/SSF761Q.Seq.d/                       1039   0.0
VFE284 (VFE284Q) /CSM/VF/VFE2-D/VFE284Q.Seq.d/                       1037   0.0
VFI589 (VFI589Q) /CSM/VF/VFI5-D/VFI589Q.Seq.d/                       1023   0.0
SSM511 (SSM511Q) /CSM/SS/SSM5-A/SSM511Q.Seq.d/                        961   0.0
AHH686 (AHH686Q) /CSM/AH/AHH6-D/AHH686Q.Seq.d/                        959   0.0
VHJ758 (VHJ758Q) /CSM/VH/VHJ7-C/VHJ758Q.Seq.d/                        957   0.0
SSK617 (SSK617Q) /CSM/SS/SSK6-A/SSK617Q.Seq.d/                        858   0.0
VSD289 (VSD289Q) /CSM/VS/VSD2-D/VSD289Q.Seq.d/                        817   0.0
VHE695 (VHE695Q) /CSM/VH/VHE6-D/VHE695Q.Seq.d/                        795   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D29628|D29628.1 Dictyostelium discoideum mRNA for discoidin II, complete cds.  1041   0.0    2
J01284|J01284.1 Slime mold (D.discoideum) discoidin-Ic gene, complete cds.    68   2e-07  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    68   2e-07  1
J01285|J01285.1 Slime mold (D.discoideum) discoidin-Id gene, 5' end.    68   2e-07  1
J01283|J01283.1 Slime mold (D.discoideum) discoidin-Ib gene, partial cds.    68   2e-07  1
J01282|J01282.1 Slime mold (D.discoideum) discoidin-ia gene.       52   3e-06  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   3e-04  15
BX649484|BX649484.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-197H24.    38   8e-04  5
BX072577|BX072577.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-151G22.    40   0.001  9
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    42   0.003  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P42530) RecName: Full=Discoidin-2; AltName: Full=Discoidin II; ...   373   e-102
(P02887) RecName: Full=Discoidin-1 subunit B/C; AltName: Full=Di...   173   3e-42
J01282_1(J01282|pid:none) Slime mold (D.discoideum) discoidin-ia...   164   1e-39
AB120175_1(AB120175|pid:none) Dictyostelium discoideum DD7-1 mRN...   152   6e-36
DLDOID(A03383) discoidin I chain D - slime mold (Dictyostelium d...   106   5e-22
AC116979_21(AC116979|pid:none) Dictyostelium discoideum chromoso...    84   3e-15
J01281_1(J01281|pid:none) Slime mold (D.discoideum) discoidin-i(...    72   2e-11
AF070482_1(AF070482|pid:none) Lytechinus variegatus echinonectin...    71   3e-11
BC076183_1(BC076183|pid:none) Danio rerio retinoschisis (X-linke...    64   4e-09
AJ578435_1(AJ578435|pid:none) Paracentrotus lividus partial mRNA...    61   3e-08

 psg: 0.75  gvh: 0.44  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSF475 is cyt

>SSF475Z.Seq
----------TCTCAACTCAAGGTCGTGGTGATCATGATCAATGGGTAACTTCATACAAA
TTAAGATACACACTTGATAATGTAAACTGGGTTGAATATAACAATGGTGAAATAATCAAT
GCCAATAAAGATAGAAATTCAATTGTTACAATCAACTTTAATCCACCAATTAAAGCTAGA
TCTATTGCCATTCATCCTCAAACCTATNATAATCATATTTCACTTCGTTGGGAATTATAT
GCATTACCAGTTAAAAGTTATTCAAATCCATCAGTCCAAGTTGGTGAAGTTTCAATTGGT
GATAGATCTCTTAACAGTGGTACTGGTTCACGTACGATTGTTCGTCACGTTAAATTCCCA
GTGGAATTCCTTTCTGTTCCAATCGTATCANTNGGTTGTAAAAAAGTTGATGCACATACT
GATAATGGTCAAATGAGATGGGAAGGTAAATCTGAAAATATTACTACAAAAGGTTTTGAT
TTAACTTTTATTACATGGGGTAATAATGCAGTTTATGATTTAACTTTTGATTATGTTGCT
GTTGAATTTAATAATTAAATAATTAAATAATAAAATAAATAAATAAATTTATTTGTTTTT
ATTTTATATTTTAAAATAAAAAAAAAAAAAAA