>SSF459 (SSF459Q) /CSM/SS/SSF4-C/SSF459Q.Seq.d/
XXXXXXXXXXCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGGGATATTAC
TTCAGTGTAGGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAA
TGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCGGGAATCCCAGTATTCTTAAT
CTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAA
ATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGC
TGGTTCTTCCATTACAATGGGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGC
TTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGG
TTATTTTTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAAAA
AATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

---tpsptfgkqnglgditsv*DSSLPQYRVGRVWLDINGNGIQDAGEPGISGIPVFLIY
GQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMGNADPTHPNTNSDAF
LSTVDNVYVTSFTSSDAGGYFFNGCSFGIIPKK*nnkkkikikikikikikkkkkkkkkk
kkkkkk

Frame A:
---vphlqplvnkmvlgillqcrillfhnivlvefgli*mvmvfkmlvnlvfresqys*s
mvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlplqwemliqliqiqivml
syqllimfmsllllllmlvviflmvvhlvlfqknkiikkk*k*k*k*k*k*kkkkkkkkk
kkkkkkk


Frame B:
---ypisnlw*tkwswgyyfsvgffsstiscw*sla*ykw*wysrcw*twyfgnpsilnl
wstinsnksncirfkwlfqi*s*fqfklllcnsccilpswffhyngkc*snsskyk**cf
linc**clchffyff*cwwlff*wlfiwyyskkik**kknknknknknknkkkkkkkkkk
kkkkkkk


Frame C:
---tpsptfgkqnglgditsv*DSSLPQYRVGRVWLDINGNGIQDAGEPGISGIPVFLIY
GQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMGNADPTHPNTNSDAF
LSTVDNVYVTSFTSSDAGGYFFNGCSFGIIPKK*nnkkkikikikikikikkkkkkkkkk
kkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF459 (SSF459Q) /CSM/SS/SSF4-C/SSF459Q.Seq.d/                        842   0.0
SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                        803   0.0
SSI677 (SSI677Q) /CSM/SS/SSI6-D/SSI677Q.Seq.d/                        803   0.0
SSG727 (SSG727Q) /CSM/SS/SSG7-B/SSG727Q.Seq.d/                        803   0.0
SSF888 (SSF888Q) /CSM/SS/SSF8-D/SSF888Q.Seq.d/                        803   0.0
SSF149 (SSF149Q) /CSM/SS/SSF1-C/SSF149Q.Seq.d/                        803   0.0
SSE121 (SSE121Q) /CSM/SS/SSE1-A/SSE121Q.Seq.d/                        803   0.0
SLH868 (SLH868Q) /CSM/SL/SLH8-C/SLH868Q.Seq.d/                        803   0.0
SHL883 (SHL883Q) /CSM/SH/SHL8-D/SHL883Q.Seq.d/                        803   0.0
SHL852 (SHL852Q) /CSM/SH/SHL8-C/SHL852Q.Seq.d/                        803   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA cloneUI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.14   1
AC114012|AC114012.4 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.    36   0.29   2
AC105770|AC105770.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.    36   0.29   2
AQ863318|AQ863318.1 nbeb0020P09f CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone nbeb0020P09f, genomic survey sequence.    30   0.30   3
AC008446|AC008446.5 Homo sapiens chromosome 5 clone CTC-340A15, complete sequence.    42   0.39   3
AL391601|AL391601.6 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-551D9.    36   0.53   8
AC099203|AC099203.4 Rattus norvegicus clone CH230-126K21, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    46   0.53   1
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46   0.53   1
AC013504|AC013504.3 Homo sapiens clone RP11-115G14, WORKING DRAFT SEQUENCE, 13 unordered pieces.    42   0.65   4
AC129433|AC129433.3 Rattus norvegicus clone CH230-296C22, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    34   2.1    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    64   4e-09
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   9e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    54   2e-06
AY458641_15(AY458641|pid:none) Uncultured marine bacterium 463 c...    52   1e-05
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    51   2e-05
(Q9KI14) RecName: Full=Serine-aspartate repeat-containing protei...    50   3e-05
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    50   5e-05
CP000909_3116(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    49   9e-05
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    47   4e-04
(Q2FJ79) RecName: Full=Serine-aspartate repeat-containing protei...    47   4e-04

 psg: 0.68  gvh: 0.48  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSF459 is cyt

>SSF459Z.Seq
----------CGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGGGATATTAC
TTCAGTGTAGGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAA
TGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCGGGAATCCCAGTATTCTTAAT
CTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAA
ATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGC
TGGTTCTTCCATTACAATGGGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGC
TTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGG
TTATTTTTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAAAA
AATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA