SSF456
Library SS
(Link to library)
Clone ID SSF456
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14293-1
Original site URL
Representative seq. ID SSF456E
(Link to Original site)
Representative DNA sequence
>SSF456 (SSF456Q) /CSM/SS/SSF4-C/SSF456Q.Seq.d/
CATTTTTTTTTTTTTCACAAAAAACTTAAACTTATATAAATAATATACAATGAGTACAGC
CGCTAGAAGACGTTTAATGCGTGATTTCAAAAGATTACAATCAGATCCACCAGCAGGTAT
TTCCGGTGCACCATTAGAAAACAATATTTTAATGTGGCAAGCTGTAATTTTTGGCCCAGA
TGATTCAATTTGGGAAGGCGCAACCTTTAAATTATCATTACAATTTTCAGAGGAATATCC
AAACGATGCCCCAACTGTAAAATTTTTATCAATACACCAATTGAAAATTTCCCCTTGGAT
GAAATCACCGAATTTGTAGGAATGTAAAAAACAAAAAAAAAANGATAAAAAAGGTAAAAA
AGATAAAAAAGATAAAAAAGATAAAAAAGATAAAAAGAAAAAGAATAAAGAATTAAATGG
TAATAGTAATAGTAGTAGTGGTAGTGAAAGTGAACCAATATCAAATAATAATAATAATAA
TATTCCAATCATTAATAATGAAACATCTCCTGTATCACAATAATAAACTGATAAAAATCT
AAAAATATTAAAAATCTAAAAAAATCTAAAAAAACCTTATATAAGGTTTTAATAATTTTT
TAAAAATAAATAAAAATAGGTTTTGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
sequence update 1999. 4. 7
Translated Amino Acid sequence
ifffftknlnlyk*YTMSTAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPD
DSIWEGATFKLSLQFSEEYPNDAPTVKFLSIHQLKISPWMKSPNL*eckkqkkxdkkgkk
dkkdkkdkkdkkkknkelngnsnsssgsesepisnnnnnnipiinnetspvsq**tdknl
kilki*knlkkpyirf**ffknk*k*vlfy*kkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
hffffhkklkli*iiyneysr*ktfna*fqkitirstsryfrctirkqyfnvascnfwpr
*fnlgrrnl*iiitifrgiskrcpnckifintpienfpldeitefvgm*ktkkkx*kr*k
r*kr*kr*kr*keke*rikw******w**k*tnik*****ysnh***niscitiin**ks
kniknlkkskktlykvliif*k*ikigfvllkkkkkkkkkkk


Frame B:
ifffftknlnlyk*YTMSTAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPD
DSIWEGATFKLSLQFSEEYPNDAPTVKFLSIHQLKISPWMKSPNL*eckkqkkxdkkgkk
dkkdkkdkkdkkkknkelngnsnsssgsesepisnnnnnnipiinnetspvsq**tdknl
kilki*knlkkpyirf**ffknk*k*vlfy*kkkkkkkkkkk


Frame C:
ffffsqkt*tyinniq*vqpledv*cviskdynqihqqvfpvhh*ktif*cgkl*flaqm
iqfgkaqplnyhynfqrniqtmpql*nfyqytn*kfplg*nhricrnvknkkkxikkvkk
ikkikkikkikrkrikn*mvivivvvvvkvnqyqiiiiiifqslimkhllyhnnkliki*
ky*kskki*knli*gfnnflkinknrfcfikkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSF456 (SSF456Q) /CSM/SS/SSF4-C/SSF456Q.Seq.d/ 615 e-175
SSL837 (SSL837Q) /CSM/SS/SSL8-B/SSL837Q.Seq.d/ 509 e-143
SSA379 (SSA379Q) /CSM/SS/SSA3-D/SSA379Q.Seq.d/ 105 9e-22
SSL684 (SSL684Q) /CSM/SS/SSL6-D/SSL684Q.Seq.d/ 98 2e-19
CHE773 (CHE773Q) /CSM/CH/CHE7-D/CHE773Q.Seq.d/ 94 3e-18
VHI752 (VHI752Q) /CSM/VH/VHI7-C/VHI752Q.Seq.d/ 42 0.011
VFD583 (VFD583Q) /CSM/VF/VFD5-D/VFD583Q.Seq.d/ 42 0.011
SSJ611 (SSJ611Q) /CSM/SS/SSJ6-A/SSJ611Q.Seq.d/ 42 0.011
SSE383 (SSE383Q) /CSM/SS/SSE3-D/SSE383Q.Seq.d/ 42 0.011
SSD242 (SSD242Q) /CSM/SS/SSD2-B/SSD242Q.Seq.d/ 42 0.011

own update 2003. 6.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 182 e-110 6
BG353131|BG353131.1 ps22c03.y1 Trichinella spiralis ML CMVsport jasmer Trichinella spiralis cDNA 5' similar to SW:UBC1_CAEEL P52478 UBIQUITIN-CONJUGATING ENZYME E2-21.5 KD ;, mRNA sequence. 52 0.009 1
BQ738924|BQ738924.1 pt38c09.y1 Trichinella spiralis immature L1 pAMP1 v1 Trichinella spiralis cDNA 5' similar to SW:UBC6_DROME P25153 UBIQUITIN-CONJUGATING ENZYME E2-17 KD ;, mRNA sequence. 52 0.009 1
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 56 0.012 2
BX537355|BX537355.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-18H6. 50 0.036 1
BX121516|BX121516.1 Danio rerio genomic clone DKEY-59M18, genomic survey sequence. 50 0.036 1
U26721|U26721.1 Drosophila virilis sodium channel protein (para) gene, exons 5,6,7, and 8, partial cds. 44 0.096 2
AX346471|AX346471.1 Sequence 1542 from Patent WO0200928. 42 0.100 2
AC122032|AC122032.4 Mus musculus chromosome 1 clone RP24-402M18, complete sequence. 42 0.11 2
AC125348|AC125348.3 Mus musculus chromosome 7 clone RP23-377H20, complete sequence. 48 0.12 2
dna update 2003. 8.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q553F3) RecName: Full=Ubiquitin-conjugating enzyme E2 2; ... 145 1e-33
NRL(1AAK) Ubiquitin conjugating enzyme (EC 6.3.2.19) - Arabidopsis 126 5e-28
(P25865) RecName: Full=Ubiquitin-conjugating enzyme E2 1; ... 126 5e-28
AB026055_1(AB026055|pid:none) Nicotiana tabacum Ntubc1 mRNA for ... 126 7e-28
AC122726_25(AC122726|pid:none) Medicago truncatula clone mth2-23... 126 7e-28
AJ843121_1(AJ843121|pid:none) Plantago major mRNA for Ubiquitin-... 125 9e-28
DQ294271_1(DQ294271|pid:none) Solanum tuberosum clone 147C03 ubi... 125 1e-27
EU964992_1(EU964992|pid:none) Zea mays clone 283008 ubiquitin-co... 124 2e-27
EU284823_1(EU284823|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 124 3e-27
AF262934_1(AF262934|pid:none) Avicennia marina ubiquitin conjuga... 124 3e-27
protein update 2009. 7. 7
PSORT

psg: 0.44 gvh: 0.33 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.45 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: mitochondrial
24.0 %: nuclear

>> prediction for SSF456 is cyt

5' end seq. ID SSF456F
5' end seq.
>SSF456F.Seq
CATTTTTTTTTTTTTCACAAAAAACTTAAACTTATATAAATAATATACAATGAGTACAGC
CGCTAGAAGACGTTTAATGCGTGATTTCAAAAGATTACAATCAGATCCACCAGCAGGTAT
TTCCGGTGCACCATTAGAAAACAATATTTTAATGTGGCAAGCTGTAATTTTTGGCCCAGA
TGATTCAATTTGGGAAGGCGCAACCTTTAAATTATCATTACAATTTTCAGAGGAATATCC
AAACGATGCCCCAACTGTAAAATTTTTATCAATACACCAATTGAAAATTTCCCCTTGGAT
GAAATCACCGAATTTGTAATTGAGGAATGTAAAAAACAAAAAAAAAAAGATAAAAAAGGT
AAAAAAGATAAAAAAGATAAAAAAGATAAAAAAGATAAAAAGAAAAAGAATAAAGAATTA
AATGGTAATAGTAATAGTAGTAGTGGTAGTGAAAGTGAACCAATATCAAATAATAATAAT
AATAATATTCCAATCATTAATAATGAAACATCTCCTGTATCACAATAATAAACTGATAAA
AATCTAAAAATATTAAAAATCTAAAAAAATCTAAAAAAACCTTATATAAGGTTTTAATAA
TTTTTTAAAAAT----------
Length of 5' end seq. 612
3' end seq. ID SSF456Z
3' end seq.
>SSF456Z.Seq
----------GGAATGTAAAAAACAAAAAAAAAAGGATAAAAAAGGTAAAAAAGATAAAA
AAGATAAAAAAGATAAAAAAGATAAAAAGAAAAAGAATAAAGAATTAAATGGTAATAGTA
ATAGTAGTAGTGGTAGTGAAAGTGAACCAATATCAAATAATAATAATAATAATATTCCAA
TCATTAATAATGAAACATCTCCTGTATCACAATAATAAACTGATAAAAATCTAAAAATAT
TAAAAATCTAAAAAAATCTAAAAAAACCTTATATAAGGTTTTAATAATTTTTTAAAAATA
AAAATAGGTTTTGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 350
Connected seq. ID SSF456P
Connected seq.
>SSF456P.Seq
CATTTTTTTTTTTTTCACAAAAAACTTAAACTTATATAAATAATATACAATGAGTACAGC
CGCTAGAAGACGTTTAATGCGTGATTTCAAAAGATTACAATCAGATCCACCAGCAGGTAT
TTCCGGTGCACCATTAGAAAACAATATTTTAATGTGGCAAGCTGTAATTTTTGGCCCAGA
TGATTCAATTTGGGAAGGCGCAACCTTTAAATTATCATTACAATTTTCAGAGGAATATCC
AAACGATGCCCCAACTGTAAAATTTTTATCAATACACCAATTGAAAATTTCCCCTTGGAT
GAAATCACCGAATTTGTAATTGAGGAATGTAAAAAACAAAAAAAAAAAGATAAAAAAGGT
AAAAAAGATAAAAAAGATAAAAAAGATAAAAAAGATAAAAAGAAAAAGAATAAAGAATTA
AATGGTAATAGTAATAGTAGTAGTGGTAGTGAAAGTGAACCAATATCAAATAATAATAAT
AATAATATTCCAATCATTAATAATGAAACATCTCCTGTATCACAATAATAAACTGATAAA
AATCTAAAAATATTAAAAATCTAAAAAAATCTAAAAAAACCTTATATAAGGTTTTAATAA
TTTTTTAAAAAT----------GGAATGTAAAAAACAAAAAAAAAAGGATAAAAAAGGTA
AAAAAGATAAAAAAGATAAAAAAGATAAAAAAGATAAAAAGAAAAAGAATAAAGAATTAA
ATGGTAATAGTAATAGTAGTAGTGGTAGTGAAAGTGAACCAATATCAAATAATAATAATA
ATAATATTCCAATCATTAATAATGAAACATCTCCTGTATCACAATAATAAACTGATAAAA
ATCTAAAAATATTAAAAATCTAAAAAAATCTAAAAAAACCTTATATAAGGTTTTAATAAT
TTTTTAAAAATAAAAATAGGTTTTGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
Length of connected seq. 962
Full length Seq ID SSF456E
Full length Seq.
>SSF456E.Seq
CATTTTTTTTTTTTTCACAAAAAACTTAAACTTATATAAATAATATACAATGAGTACAGC
CGCTAGAAGACGTTTAATGCGTGATTTCAAAAGATTACAATCAGATCCACCAGCAGGTAT
TTCCGGTGCACCATTAGAAAACAATATTTTAATGTGGCAAGCTGTAATTTTTGGCCCAGA
TGATTCAATTTGGGAAGGCGCAACCTTTAAATTATCATTACAATTTTCAGAGGAATATCC
AAACGATGCCCCAACTGTAAAATTTTTATCAATACACCAATTGAAAATTTCCCCTTGGAT
GAAATCACCGAATTTGTAGGAATGTAAAAAACAAAAAAAAAANGATAAAAAAGGTAAAAA
AGATAAAAAAGATAAAAAAGATAAAAAAGATAAAAAGAAAAAGAATAAAGAATTAAATGG
TAATAGTAATAGTAGTAGTGGTAGTGAAAGTGAACCAATATCAAATAATAATAATAATAA
TATTCCAATCATTAATAATGAAACATCTCCTGTATCACAATAATAAACTGATAAAAATCT
AAAAATATTAAAAATCTAAAAAAATCTAAAAAAACCTTATATAAGGTTTTAATAATTTTT
TAAAAATAAATAAAAATAGGTTTTGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
Length of full length seq. 667