SSF446
Library SS
(Link to library)
Clone ID SSF446
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05120-1
Original site URL
Representative seq. ID SSF446Z
(Link to Original site)
Representative DNA sequence
>SSF446 (SSF446Q) /CSM/SS/SSF4-B/SSF446Q.Seq.d/
XXXXXXXXXXATAATAATCTTAATAATAATAATAATAATAGTTTAATATCAACAATAGTA
AAAATACTATAAAAATAACTTCTAAATATATATAGATTCATTTGTTAAAGATTTTTTTTA
ATTATATAATATTATAATGTTTTATAAAATAAATAAAAATACTTGTTCATTTTTTTTTTA
AATTT
sequence update 1997.10.30
Translated Amino Acid sequence
---NNLNNNNNNSLISTIVKIL*k*llniyrfic*rfflii*yynvl*nk*kylfiffln


Translated Amino Acid sequence (All Frames)
Frame A:
---**s*******fninnskntikitskyi*ihllkiffnyiil*cfik*ikilvhfffk
f


Frame B:
---NNLNNNNNNSLISTIVKIL*k*llniyrfic*rfflii*yynvl*nk*kylfiffln


Frame C:
---iiliiiiiiv*yqq**kyyknnf*iyidsfvkdff*lyniimfykinkntcsfff*i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSF446 (SSF446Q) /CSM/SS/SSF4-B/SSF446Q.Seq.d/ 101 3e-21
VHH615 (VHH615Q) /CSM/VH/VHH6-A/VHH615Q.Seq.d/ 38 0.043
VHD331 (VHD331Q) /CSM/VH/VHD3-B/VHD331Q.Seq.d/ 38 0.043
SSK157 (SSK157Q) /CSM/SS/SSK1-C/SSK157Q.Seq.d/ 38 0.043
SSC414 (SSC414Q) /CSM/SS/SSC4-A/SSC414Q.Seq.d/ 38 0.043
SLC264 (SLC264Q) /CSM/SL/SLC2-C/SLC264Q.Seq.d/ 38 0.043
AHB194 (AHB194Q) /CSM/AH/AHB1-D/AHB194Q.Seq.d/ 38 0.043
VSI534 (VSI534Q) /CSM/VS/VSI5-B/VSI534Q.Seq.d/ 36 0.17
VSD303 (VSD303Q) /CSM/VS/VSD3-A/VSD303Q.Seq.d/ 36 0.17
VSB626 (VSB626Q) /CSM/VS/VSB6-B/VSB626Q.Seq.d/ 36 0.17

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 44 5e-07 8
AX345224|AX345224.1 Sequence 295 from Patent WO0200928. 48 7e-05 4
AX251768|AX251768.1 Sequence 29 from Patent WO0168911. 48 7e-05 4
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 40 1e-04 7
L36902|L36902.1 Saccharomyces cerevisiae mitochondrion origin of replication (ori3 and ori4). 32 3e-04 5
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 42 5e-04 7
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 40 0.001 9
AE001402|AE001402.1 Plasmodium falciparum 3D7 chromosome 2 section 39 of 73 of the complete sequence. 38 0.001 5
AL844512|AL844512.16 Zebrafish DNA sequence from clone DKEY-8M7. 36 0.001 6
BX664731|BX664731.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-67N5. 38 0.002 5
dna update 2004. 2.10
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 101,079,452
protein update 2009. 6.11
PSORT -
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSF446Z
3' end seq.
>SSF446Z.Seq
----------ATAATAATCTTAATAATAATAATAATAATAGTTTAATATCAACAATAGTA
AAAATACTATAAAAATAACTTCTAAATATATATAGATTCATTTGTTAAAGATTTTTTTTA
ATTATATAATATTATAATGTTTTATAAAATAAATAAAAATACTTGTTCATTTTTTTTTTA
AATTT
Length of 3' end seq. 175
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -