>SSF428 (SSF428Q) /CSM/SS/SSF4-B/SSF428Q.Seq.d/
XXXXXXXXXXATGTCACACCATTATGAATTGTACTGCTGTTTGTCCAAAAGGTTTAAACC
NTGGTAAAAGTATTGCTAATATTAAATATTTATTAGCACACAATTAATTTTTTTACCAAT
TAAACTTTATTTTATAAAAAAAACAAAACAAAACAACATTCAAAAATAATAATAATAATA
ATAATAATNATAATAATAATTATTTTTTTAAATAATAATTTTCATTTTAATTTAAATAAT
ATAAATAATAATAATTATAACAAAATTAAAAAAAAAAAAAAAAAATAACAACAACTTAAT
AGTAATTGATATNNTAAAATATAAATTAAAAAAAAAAAAAAAAA

---vtpl*ivllfvqkv*txvkvllilniy*htinfftn*TLFYKKNKTKQHSKIIIIII
IXIIIIIFLNNNFHFNLNNINNNNYNKIKKKKKK*qqlnsn*yxki*ikkkkk

Frame A:
---chtimnctavcpkglnxgksianikyllahn*ffyqlnfil*kkqnkttfknnnnnn
nnxnnnyffk**fsf*fk*yk***l*qn*kkkkkittt***lix*nin*kkkkk


Frame B:
---vtpl*ivllfvqkv*txvkvllilniy*htinfftn*TLFYKKNKTKQHSKIIIIII
IXIIIIIFLNNNFHFNLNNINNNNYNKIKKKKKK*qqlnsn*yxki*ikkkkk


Frame C:
---shhyelycclskrfkpw*kyc*y*ifistqliflpiklyfikktkqnniqk******
*x***lff*iiifili*ii*iiiiitklkkkkknnnnlividxxkyklkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF428 (SSF428Q) /CSM/SS/SSF4-B/SSF428Q.Seq.d/                        196   2e-49
VSA690 (VSA690Q) /CSM/VS/VSA6-D/VSA690Q.Seq.d/                        180   9e-45
VFN649 (VFN649Q) /CSM/VF/VFN6-C/VFN649Q.Seq.d/                        180   9e-45
VFJ293 (VFJ293Q) /CSM/VF/VFJ2-D/VFJ293Q.Seq.d/                        180   9e-45
SSH675 (SSH675Q) /CSM/SS/SSH6-D/SSH675Q.Seq.d/                        180   9e-45
SSH565 (SSH565Q) /CSM/SS/SSH5-C/SSH565Q.Seq.d/                        180   9e-45
SSF569 (SSF569Q) /CSM/SS/SSF5-C/SSF569Q.Seq.d/                        180   9e-45
AFI476 (AFI476Q) /CSM/AF/AFI4-D/AFI476Q.Seq.d/                        180   9e-45
VFI723 (VFI723Q) /CSM/VF/VFI7-A/VFI723Q.Seq.d/                        172   2e-42
VSF273 (VSF273Q) /CSM/VS/VSF2-D/VSF273Q.Seq.d/                        153   2e-36

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AQ410488|AQ410488.1 HS_5117_A2_G01_T7A RPCI-11 Human Male BAC Library Homo sapiensgenomic clone Plate=693 Col=2 Row=M, genomic survey sequence.    34   0.22   2
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    32   0.63   2
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32   0.64   2
D86574|D86574.1 Plasmodium falciparum DNA for iron-sulfur subunit of succinate dehydrogenase, complete cds.    32   0.83   2
AF217618|AF217618.1 Plasmodium falciparum succinate dehydrogenase iron-sulfur subunit gene, complete cds.    32   0.84   2
BQ596952|BQ596952.1 PfESToab24g06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q94652 Q94652 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    32   0.86   2
BI816352|BI816352.1 PfESToaa39d09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q94652 Q94652 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    32   0.86   2
BQ596432|BQ596432.1 PfESToab33g01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q94652 Q94652 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    32   0.88   2
CG817750|CG817750.1 SOYDC76TH LargeInsertSoybeanGenLib Glycine max genomic clone H11B04:MTP9N7, genomic survey sequence.    32   1.0    3
AG098807|AG098807.1 Pan troglodytes DNA, clone: PTB-100O08.F.      44   1.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000544_43(CP000544|pid:none) Halorhodospira halophila SL1, com...    52   8e-06
U17886_1(U17886|pid:none) Human succinate dehydrogenase iron-pro...    51   1e-05
BT047601_1(BT047601|pid:none) Salmo salar clone ssal-eve-538-282...    51   1e-05
BT043735_1(BT043735|pid:none) Salmo salar clone HM6_0442 succina...    51   1e-05
BT081063_1(BT081063|pid:none) Caligus clemensi clone ccle-evs-51...    51   1e-05
BT073819_1(BT073819|pid:none) Oncorhynchus mykiss clone omyk-evo...    51   1e-05
BT075503_1(BT075503|pid:none) Osmerus mordax clone omor-eva-507-...    51   1e-05
(P21912) RecName: Full=Succinate dehydrogenase [ubiquinone] iron...    51   1e-05
(Q3T189) RecName: Full=Succinate dehydrogenase [ubiquinone] iron...    51   1e-05
I38895(I38895;I38206;A34045;A32394) succinate dehydrogenase (ubi...    51   1e-05

 psg: 0.72  gvh: 0.33  alm: 0.09  top: 0.20  tms: 0.07  mit: 0.38  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.38  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: Golgi
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSF428 is mit

>SSF428Z.Seq
----------ATGTCACACCATTATGAATTGTACTGCTGTTTGTCCAAAAGGTTTAAACC
NTGGTAAAAGTATTGCTAATATTAAATATTTATTAGCACACAATTAATTTTTTTACCAAT
TAAACTTTATTTTATAAAAAAAACAAAACAAAACAACATTCAAAAATAATAATAATAATA
ATAATAATNATAATAATAATTATTTTTTTAAATAATAATTTTCATTTTAATTTAAATAAT
ATAAATAATAATAATTATAACAAAATTAAAAAAAAAAAAAAAAAATAACAACAACTTAAT
AGTAATTGATATNNTAAAATATAAATTAAAAAAAAAAAAAAAAA