AFL265
Library AF
(Link to library)
Clone ID AFL265
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFL265P
(Link to Original site)
Representative DNA sequence
>AFL265 (AFL265Q) /CSM/AF/AFL2-C/AFL265Q.Seq.d/
AAACAATTATCAGCCANCAAAAAGATTGCAATTGCAAAAGTTGATTGTNCTCAACATGAA
CAACTNTGTAAACAAAANAAAGTTCAAGGTTNTCCAACTTTAGTTGTTTTCAAXXXXXXX
XXXAAGATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCG
ATATGAAGAAATTCCCACAACCAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCA
GCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACC
TTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCA
TTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGT
ACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCT
CCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTA
AAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGT
GATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAAT
CCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGAT
AACGCTGCCATGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAA
AGATTCTTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
KQLSAXKKIAIAKVDCXQHEQLCKQXKVQGXPTLVVF---

---DVKKIATSQKGNAVFCWVDMKKFPQPSNSYGSLW*scsshlc*fscq*sslqfr*kr
nlliryrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*il
rsmvrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**qr
ksnll*rskk*syelc*ihsr*rchefklpssqtddnvnlkkil


Translated Amino Acid sequence (All Frames)
Frame A:
KQLSAXKKIAIAKVDCXQHEQLCKQXKVQGXPTLVVF---

---km*rkslphkkvmpfsvgsi*rnshnqathmglsgkvvpaisvdsvankarynfdek
etfsfdtvskwiqdviggkvspfvksqpepesndapvkvavgttfkklvldspkdvlvef
yapwcghcknlapiydklgeylkdvesvsivkidadsndvpsdieirgyptimlfkaddk
enpisyegqrndhmnfvefiqdnaamnsnyhhlklmimxi*krff

Frame B:
nnyqpxkrlqlqklivlnmnnxvnkxkfkvxql*lfs---

---rckenryltkr*crfllgryeeipttkqliwvslvklfqpslliqlpiklvtismkk
kpshsipspngskmslvvkflhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwlns
tlhgaviarillqstin*vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmtk
kiqslmkvkemii*tllnsfkitlp*iqitiisn***cxskkds

Frame C:
tiisxqkdcncks*lxst*ttx*tkxssrxsnfscfq---

---DVKKIATSQKGNAVFCWVDMKKFPQPSNSYGSLW*scsshlc*fscq*sslqfr*kr
nlliryrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*il
rsmvrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**qr
ksnll*rskk*syelc*ihsr*rchefklpssqtddnvnlkkil

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFL265 (AFL265Q) /CSM/AF/AFL2-C/AFL265Q.Seq.d/ 1427 0.0
AFO363 (AFO363Q) /CSM/AF/AFO3-C/AFO363Q.Seq.d/ 1298 0.0
AFM548 (AFM548Q) /CSM/AF/AFM5-B/AFM548Q.Seq.d/ 1298 0.0
AFM212 (AFM212Q) /CSM/AF/AFM2-A/AFM212Q.Seq.d/ 1298 0.0
AFK779 (AFK779Q) /CSM/AF/AFK7-D/AFK779Q.Seq.d/ 1298 0.0
AFK539 (AFK539Q) /CSM/AF/AFK5-B/AFK539Q.Seq.d/ 1298 0.0
AFK217 (AFK217Q) /CSM/AF/AFK2-A/AFK217Q.Seq.d/ 1298 0.0
AFJ889 (AFJ889Q) /CSM/AF/AFJ8-D/AFJ889Q.Seq.d/ 1298 0.0
AFK269 (AFK269Q) /CSM/AF/AFK2-C/AFK269Q.Seq.d/ 1292 0.0
AFJ720 (AFJ720Q) /CSM/AF/AFJ7-A/AFJ720Q.Seq.d/ 1292 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read. 599 e-167 1
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 78 2e-10 1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 4e-09 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 4e-09 1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 4e-09 1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 4e-09 1
CB176061|CB176061.1 pl17e07.y3 Ancylostoma ceylanicum adult Ancylostoma ceylanicum cDNA 5' similar to TR:O17908 O17908 H06O01.1 PROTEIN. [1] ;, mRNA sequence. 70 6e-08 1
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 70 6e-08 1
CK030146|CK030146.1 AGENCOURT_16621384 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7052631 5', mRNA sequence. 70 6e-08 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 6e-08 1
dna update 2004. 8.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 165 1e-39
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 159 9e-38
(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 158 2e-37
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 157 5e-37
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 154 3e-36
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 151 2e-35
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 148 2e-34
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 148 2e-34
(P13667) RecName: Full=Protein disulfide-isomerase A4; ... 148 2e-34
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 148 2e-34
protein update 2009. 4.25
PSORT

psg: 0.71 gvh: 0.31 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for AFL265 is nuc

5' end seq. ID AFL265F
5' end seq.
>AFL265F.Seq
AAACAATTATCAGCCANCAAAAAGATTGCAATTGCAAAAGTTGATTGTNCTCAACATGAA
CAACTNTGTAAACAAAANAAAGTTCAAGGTTNTCCAACTTTAGTTGTTTTCAA-------
---
Length of 5' end seq. 113
3' end seq. ID AFL265Z
3' end seq.
>AFL265Z.Seq
----------AAGATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGT
TGGGTCGATATGAAGAAATTCCCACAACCAAGCAACTCATATGGGTCTCTCTGGTAAAGT
TGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAA
AGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGT
TTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGC
CGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATT
CTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGA
ATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGT
ACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAA
AGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCAT
TCAAGATAACGCTGCCATGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAAT
CTAAAAAAGATTCTTC
Length of 3' end seq. 666
Connected seq. ID AFL265P
Connected seq.
>AFL265P.Seq
AAACAATTATCAGCCANCAAAAAGATTGCAATTGCAAAAGTTGATTGTNCTCAACATGAA
CAACTNTGTAAACAAAANAAAGTTCAAGGTTNTCCAACTTTAGTTGTTTTCAA-------
---AAGATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCG
ATATGAAGAAATTCCCACAACCAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCA
GCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACC
TTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCA
TTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGT
ACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCT
CCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTA
AAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGT
GATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAAT
CCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGAT
AACGCTGCCATGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAA
AGATTCTTC
Length of connected seq. 779
Full length Seq ID -
Full length Seq. -
Length of full length seq. -