>SSF396 (SSF396Q) /CSM/SS/SSF3-D/SSF396Q.Seq.d/
XXXXXXXXXXGTTTATTCAAGTCAATGGCCACTCTCTCTGTCGTTCATAATGTCGCTGAC
CTTTATAATAATGTTTTAATTGATACACCATTAGCACCATACATTCAAGGTTGTTTATCA
GAAGAAGATTTAGATGAAATGAATATTGAAATTATTAGAAATACTTTATATAAAGCTTAT
TTAGAAGATTTTTACAACTATTGCAAATATCTCGGTGGTCAAACTGAATTGATCATGAGT
GATATTTTAAAGTTTGAAGCAGATCGTAGATCAATCAATATCACAATCAATAGTTTTGGT
GCAACTGAACTCTCAAAGGATGATCGTGAAAAACTTTACCCATCCTTAGGTCTTTTATAC
CCAGAAGGTACTAGCAAACTTGGTAAAGCTGAAGACGTTGATCAAGTTAGAGGTATCCTC
GAAGTTTACTCTACCTATCGTAATTTCTTCTCTGATGGTGTCAACAACGAGAAATCATTG
GAAGACTCATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTTTTGAAGATCAATAT
GGTTATGGTGTCTTTTACGCTTACATTAAATTAAGAGAACAAGAAATTAGAAATATAGTT
TGGATTGCTGAATGTATTAGTCAAAATATGAAACAAAAAATGAATCAATACATTCCAATC
TTTTAAAAAAATAACTATATCTAATTATTAAAAAAAATAAAAAAAAAAATAAAAAAAAAA
TAAAATAAAATAAAACAATAAT

---LFKSMATLSVVHNVADLYNNVLIDTPLAPYIQGCLSEEDLDEMNIEIIRNTLYKAYL
EDFYNYCKYLGGQTELIMSDILKFEADRRSINITINSFGATELSKDDREKLYPSLGLLYP
EGTSKLGKAEDVDQVRGILEVYSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMAFEDQYG
YGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYIPIF*knnyi*llkkikkkikkk*
nkikq*

Frame A:
---fiqvnghslcrs*cr*pl**cfn*ytistihsrlfirrrfr*ney*ny*kyfi*slf
rrflqllqisrwsn*idhe*yfkv*srs*inqyhnq*fwcn*tlkg*s*ktlpilrsfip
rry*qtw*s*rr*ss*ryprsllyls*fll*wcqqreiigrlil*t*sslksygf*rsiw
lwcllrlh*ikrtrn*kysldc*my*skyetknesihsnllkk*lyliikknkkknkkki
k*nkti


Frame B:
---LFKSMATLSVVHNVADLYNNVLIDTPLAPYIQGCLSEEDLDEMNIEIIRNTLYKAYL
EDFYNYCKYLGGQTELIMSDILKFEADRRSINITINSFGATELSKDDREKLYPSLGLLYP
EGTSKLGKAEDVDQVRGILEVYSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMAFEDQYG
YGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYIPIF*knnyi*llkkikkkikkk*
nkikq*


Frame C:
---yssqwplslsfimsltfiimf*lihh*hhtfkvvyqkki*mk*ilklleilyikli*
kifttianisvvkln*s*vif*slkqivdqsisqsivlvqlnsqrmivknfthp*vfytq
kvlanlvklktliklevsskftlpivisslmvsttrnhwkthslnmkft*ivwllkinmv
mvsftltln*enkklei*fgllnvlvki*nkk*intfqsfkkitisny*kk*kkk*kknk
ik*nnn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK721 (SSK721Q) /CSM/SS/SSK7-A/SSK721Q.Seq.d/                       1304   0.0
SSF396 (SSF396Q) /CSM/SS/SSF3-D/SSF396Q.Seq.d/                       1304   0.0
VSA730 (VSA730Q) /CSM/VS/VSA7-B/VSA730Q.Seq.d/                       1300   0.0
SSI279 (SSI279Q) /CSM/SS/SSI2-D/SSI279Q.Seq.d/                       1281   0.0
VFE465 (VFE465Q) /CSM/VF/VFE4-C/VFE465Q.Seq.d/                       1275   0.0
SFG830 (SFG830Q) /CSM/SF/SFG8-B/SFG830Q.Seq.d/                       1267   0.0
VFN401 (VFN401Q) /CSM/VF/VFN4-A/VFN401Q.Seq.d/                       1261   0.0
VFE167 (VFE167Q) /CSM/VF/VFE1-C/VFE167Q.Seq.d/                       1259   0.0
CFJ470 (CFJ470Q) /CSM/CF/CFJ4-C/CFJ470Q.Seq.d/                       1259   0.0
CFF615 (CFF615Q) /CSM/CF/CFF6-A/CFF615Q.Seq.d/                       1259   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U13150|U13150.1 Dictyostelium discoideum vacuolar ATPase subunit DVA41 mRNA, complete cds.  1273   0.0    2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1136   0.0    2
BI742459|BI742459.1 kt51b11.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q9W4P5 Q9W4P5 CG2934 PROTEIN. ;, mRNA sequence.   100   5e-23  3
BE580863|BE580863.1 kp82d12.y2 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    92   5e-21  4
CB098495|CB098495.1 ku54c04.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q9W4P5 Q9W4P5 CG2934 PROTEIN. ;, mRNA sequence.    92   1e-20  3
BE580116|BE580116.1 kq37d03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    86   4e-16  2
BE223572|BE223572.1 kp82d12.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    84   2e-15  2
BE029219|BE029219.1 kp26d05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:VATX_BOVIN P12953 VACUOLAR ATP SYNTHASE SUBUNIT AC39 ;, mRNA sequence.    76   2e-13  2
BI506652|BI506652.1 BB170020B20A07 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170020B20A07 5', mRNA sequence.    86   8e-13  1
BI508631|BI508631.1 BB170008B10B05 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170008B10B05 5', mRNA sequence.    86   8e-13  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54641) RecName: Full=V-type proton ATPase subunit d;          ...   439   e-122
A55016(A55016) lysosomal membrane protein DVA41 - slime mold (Di...   437   e-121
(Q9W4P5) RecName: Full=V-type proton ATPase subunit d 1;        ...   267   3e-70
BT081086_1(BT081086|pid:none) Caligus clemensi clone ccle-evs-51...   266   6e-70
BT077935_1(BT077935|pid:none) Lepeophtheirus salmonis clone lsal...   266   6e-70
(Q5ZHL0) RecName: Full=V-type proton ATPase subunit d 2;        ...   264   2e-69
BC042233_1(BC042233|pid:none) Xenopus laevis ATPase, H+ transpor...   263   3e-69
BC125665_1(BC125665|pid:none) Xenopus tropicalis ATPase, H+ tran...   262   9e-69
AC006611_1(AC006611|pid:none) Caenorhabditis elegans cosmid C30F...   261   1e-68
(P51863) RecName: Full=V-type proton ATPase subunit d 1;        ...   261   2e-68

 psg: 0.91  gvh: 0.54  alm: 0.46  top: 0.30  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSF396 is cyt

>SSF396Z.Seq
----------GTTTATTCAAGTCAATGGCCACTCTCTCTGTCGTTCATAATGTCGCTGAC
CTTTATAATAATGTTTTAATTGATACACCATTAGCACCATACATTCAAGGTTGTTTATCA
GAAGAAGATTTAGATGAAATGAATATTGAAATTATTAGAAATACTTTATATAAAGCTTAT
TTAGAAGATTTTTACAACTATTGCAAATATCTCGGTGGTCAAACTGAATTGATCATGAGT
GATATTTTAAAGTTTGAAGCAGATCGTAGATCAATCAATATCACAATCAATAGTTTTGGT
GCAACTGAACTCTCAAAGGATGATCGTGAAAAACTTTACCCATCCTTAGGTCTTTTATAC
CCAGAAGGTACTAGCAAACTTGGTAAAGCTGAAGACGTTGATCAAGTTAGAGGTATCCTC
GAAGTTTACTCTACCTATCGTAATTTCTTCTCTGATGGTGTCAACAACGAGAAATCATTG
GAAGACTCATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTTTTGAAGATCAATAT
GGTTATGGTGTCTTTTACGCTTACATTAAATTAAGAGAACAAGAAATTAGAAATATAGTT
TGGATTGCTGAATGTATTAGTCAAAATATGAAACAAAAAATGAATCAATACATTCCAATC
TTTTAAAAAAATAACTATATCTAATTATTAAAAAAAATAAAAAAAAAAATAAAAAAAAAA
TAAAATAAAATAAAACAATAAT