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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL262
Library AF
(Link to library)
Clone ID AFL262
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID AFL262P
(Link to Original site)
Representative DNA sequence 
>AFL262 (AFL262Q) /CSM/AF/AFL2-C/AFL262Q.Seq.d/
AATGCAAAAATGAATNTAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAAGACA
CAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGATTTTT
CAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAAAGAA
TGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTTCAAA
CATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGAGTGGAGGTGG
GTAGGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATTGAA
AATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTACAATTCATACATTTATTACA
TTTGGTGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTTTCAAAACATGTTGNTCAT
CATTCAACTTTTCCTCAAGATAAAATCATTTTCAATGTTGGNATTGNAATACCATCAAAA
TGGGTAACTGCAAAATTAATAGATCTAAGNCCAGATGATCAAACTGATTTAGCTTTATTA
GAAATTAXXXXXXXXXXTTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCAT
TTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATA
AAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACAT
GATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAAT
AAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTA
GATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCA
ATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTT
CCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTT
TATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAAC
TCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAA
TTTATTGGTTTGGTAAAGTCACAATATATGACTATCCAAATAAATATTATTGTATACCAA
CTTCAACAATTTTAACTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAAATTTCTTTT
AAGAAAANANAAAAAAANAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nakmnxiskkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfqcqifke
chlmelhyteiyihnlkyfkh*KKTKVYQVVVVEVVEWRWVGYLNSINIGNIDLNDDLIE
NEIINRTVLIRVGTIHTFITFGAGCRIGKNLILVSKHVXHHSTFPQDKIIFNVGIXIPSK
WVTAKLIDLXPDDQTDLALLEI---

---LALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEK
DNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKF
IGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVP
EPGYSESSLIFSKSDAKFIGLVKSQYMTIQINIIVYQLQQF*ld*ssfkkefnqisfkkx
xkx
Translated Amino Acid sequence (All Frames) 
Frame A:
nakmnxiskkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfqcqifke
chlmelhyteiyihnlkyfkh*KKTKVYQVVVVEVVEWRWVGYLNSINIGNIDLNDDLIE
NEIINRTVLIRVGTIHTFITFGAGCRIGKNLILVSKHVXHHSTFPQDKIIFNVGIXIPSK
WVTAKLIDLXPDDQTDLALLEI---

---fsfirny*l*fnssfkf****y***w*y***rinkk*www**i**qi*kskttt**k
r**skw***q****kfk*kpyck***iyitii*lssfr*irkgkretrl*nhl*y*tn*i
hwpk*riig*ryyfmwfskgty*fitmsrikdkg*yslsih*kgnsiif***tfrm*lct
rtrll*ilinlfkv*ckiywfgkvtiydypnkyyciptstiltglvkfqkriqsnff*ex
xkkx

Frame B:
mqk*x*fqkkrfkrlvn*rhkrmdq*i*kkrtkfrecgffki*mgw*tiiiifnvrfskn
vtlwsctiqkfiftt*nisnikkkqkyik*wwwrw*sggg*vi*ivlilvili*mmi*lk
mklltgqf*lelvqfihllhlvlvvelvkt*ywfqnmlxiiqlflkiksfsmlxlxyhqn
g*lqn**i*xqmikli*ly*kl---

---LALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEK
DNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKF
IGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVP
EPGYSESSLIFSKSDAKFIGLVKSQYMTIQINIIVYQLQQF*ld*ssfkkefnqisfkkx
xkx

Frame C:
cknexnfkkkdlkdwsiedtkewinefkkrgpnlenvdfsrfewdgeqlslfsmsdfqrm
spygvalyrnlysqpkifqtlkknksisssgggggrvevgrlfk*y*yw*y*fk**fn*k
*ny*qdsfn*swynsyiyyiwcwl*nw*klnigfktcxssfnfssr*nhfqcwxxntikm
gnckinrskxr*sn*fsfirn---

---*ly*kllimiqfii*iliiivlvvvvvlivknq*kvvvvvvnmitnikiknnnmmkk
imkqvvvvtimmmki*iktil*ivvnlhhhhliiii*mn*krkernkimksfvilnqlns
lakmkdywvkilfyvvfqrnvliyhyvkn*r*rliqfihplkreqyhflminv*nvtlyq
nqvtlnph*sfqslmqnllvw*shni*lsk*illytnfnnfnwisqvskknsikfllrkx
kkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL262 (AFL262Q) /CSM/AF/AFL2-C/AFL262Q.Seq.d/                       2393   0.0
AFK472 (AFK472Q) /CSM/AF/AFK4-C/AFK472Q.Seq.d/                       1407   0.0
SFL166 (SFL166Q) /CSM/SF/SFL1-C/SFL166Q.Seq.d/                       1370   0.0
CFB423 (CFB423Q) /CSM/CF/CFB4-A/CFB423Q.Seq.d/                       1362   0.0
SFC560 (SFC560Q) /CSM/SF/SFC5-C/SFC560Q.Seq.d/                       1358   0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/                       1352   0.0
CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/                       1352   0.0
AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/                       1352   0.0
AFE138 (AFE138Q) /CSM/AF/AFE1-B/AFE138Q.Seq.d/                       1352   0.0
AFB734 (AFB734Q) /CSM/AF/AFB7-B/AFB734Q.Seq.d/                       1350   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   1e-21  29
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   1e-17  27
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44   7e-16  26
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    52   1e-15  21
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    50   4e-15  26
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   5e-14  25
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   6e-14  27
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         48   1e-13  20
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            58   1e-13  26
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    42   2e-13  20
dna update 2004. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos...    41   0.081
AB299373_1(AB299373|pid:none) Ciona intestinalis Ci-Elf mRNA for...    36   3.4
AM086846_1(AM086846|pid:none) Senna atomaria chloroplast partial...    35   4.5
AM086900_1(AM086900|pid:none) Senna spectabilis chloroplast part...    35   4.5
BT020861_1(BT020861|pid:none) Bos taurus ets variant gene 6 (TEL...    35   4.5
(P41212) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   5.8
DQ841178_1(DQ841178|pid:none) Homo sapiens B-cell lineage specif...    35   5.8
(Q0VC65) RecName: Full=Transcription factor ETV6;  &BC120331_1(B...    35   5.8
Z35761_1(Z35761|pid:none) Homo sapiens TEL/ABL fusion protien.         35   5.8
(P97360) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   7.6
protein update 2009. 4.25
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for AFL262 is cyt
5' end seq. ID AFL262F
5' end seq. 
>AFL262F.Seq
AATGCAAAAATGAATNTAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAAGACA
CAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGATTTTT
CAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAAAGAA
TGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTTCAAA
CATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGAGTGGAGGTGG
GTAGGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATTGAA
AATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTACAATTCATACATTTATTACA
TTTGGTGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTTTCAAAACATGTTGNTCAT
CATTCAACTTTTCCTCAAGATAAAATCATTTTCAATGTTGGNATTGNAATACCATCAAAA
TGGGTAACTGCAAAATTAATAGATCTAAGNCCAGATGATCAAACTGATTTAGCTTTATTA
GAAATTA----------
Length of 5' end seq. 607
3' end seq. ID AFL262Z
3' end seq. 
>AFL262Z.Seq
----------TTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATT
CTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTA
GTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGATGAAA
AAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACC
ATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAAT
TAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAAT
TCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGG
AACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCAT
CCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTAC
CAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTTATTG
GTTTGGTAAAGTCACAATATATGACTATCCAAATAAATATTATTGTATACCAACTTCAAC
AATTTTAACTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAAATTTCTTTTAAGAAAA
NANAAAAAAANAA
Length of 3' end seq. 723
Connected seq. ID AFL262P
Connected seq. 
>AFL262P.Seq
AATGCAAAAATGAATNTAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAAGACA
CAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGATTTTT
CAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAAAGAA
TGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTTCAAA
CATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGAGTGGAGGTGG
GTAGGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATTGAA
AATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTACAATTCATACATTTATTACA
TTTGGTGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTTTCAAAACATGTTGNTCAT
CATTCAACTTTTCCTCAAGATAAAATCATTTTCAATGTTGGNATTGNAATACCATCAAAA
TGGGTAACTGCAAAATTAATAGATCTAAGNCCAGATGATCAAACTGATTTAGCTTTATTA
GAAATTA----------TTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCAT
TTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATA
AAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACAT
GATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAAT
AAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTA
GATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCA
ATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTT
CCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTT
TATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAAC
TCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAA
TTTATTGGTTTGGTAAAGTCACAATATATGACTATCCAAATAAATATTATTGTATACCAA
CTTCAACAATTTTAACTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAAATTTCTTTT
AAGAAAANANAAAAAAANAA
Length of connected seq. 1330
Full length Seq ID -
Full length Seq. -
Length of full length seq. -