>SSF373 (SSF373Q) /CSM/SS/SSF3-D/SSF373Q.Seq.d/
CAGAATGTCATTTCCATATGAATATATATTTAAATACATCATTATTGGTGATATGGGTGT
AGGTAAATCATGTCTCCTTCACCAATTCACTGAAAATAAATTCGTCCCAGATTCACCACA
TACAATTGGTGTAGAGTTTGGTACAAGAATTGTAGATGTAAATAATAAAAAAATTAAATT
ACAAATTTGGGATACTGCAGGTCAAGAAAGATTCAGGGCAGTTACACGTTCATATTATAG
AGGTGCAGCAGGTGCATTATTAGTTTATGATATTACAAGAAGAATTACATACAACCACTT
AACCACTTGGTTAACTGATGCTAGAAATCTTACTAATCCAAACACTGTCATCATGTTAAT
TGGTAACAAAAAAGATTTGGAAGGTCAAAGAGATGTCACCTATGAAGAGGCTTCTGCTTT
TGCAAAACAAAATGGTTTAATTTTTGTGGAATCTAGTGCAAAAACTGGTGAGAATGTAGA
AGAAGCTTTCTTAAGAACTGCTAAATTAATTTTCCAAAGCGTTCAAGAGGGTAATGTTGA
TCTCATCCCGGATGGAGGTATTACCAAGAACCCACCACAAACCATCACTGATAAACCTCA
AGATGCCAGTAAATGTTCTTGTTAATAAAATTTTAAAAAAXXXXXXXXXX

RMSFPYEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKL
QIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLI
GNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVD
LIPDGGITKNPPQTITDKPQDASKCSC**nfk---

Frame A:
qnvisi*iyi*ihhyw*ygcr*imspspih*k*irprfttynwcrvwykncrck**kn*i
tnlgycrsrkiqgsytfil*rcsrciisl*yykknyiqplnhlvn*c*ksy*skhchhvn
w*qkrfgrskrchl*rgfcfcktkwfnfcgi*cknw*ecrrsflknc*infpkrsrg*c*
shpgwryyqepttnhh**tsrcq*mfllikf*k---


Frame B:
RMSFPYEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKL
QIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLI
GNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVD
LIPDGGITKNPPQTITDKPQDASKCSC**nfk---


Frame C:
echfhmniylntsllviwv*vnhvsftnslkinssqihhiqlv*slvqel*m*iikklny
kfgilqvkkdsgqlhvhiievqqvhy*fmilqeelhttt*plg*lmleilliqtlssc*l
vtkkiwkvkemspmkrllllqnkmv*flwnlvqklvrm*kkls*elln*fskafkrvmli
ssrmevlprthhkpslinlkmpvnvlvnkilk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF373 (SSF373Q) /CSM/SS/SSF3-D/SSF373Q.Seq.d/                       1227   0.0
AHG763 (AHG763Q) /CSM/AH/AHG7-C/AHG763Q.Seq.d/                       1185   0.0
VSE476 (VSE476Q) /CSM/VS/VSE4-D/VSE476Q.Seq.d/                       1166   0.0
SSM129 (SSM129Q) /CSM/SS/SSM1-B/SSM129Q.Seq.d/                       1166   0.0
SSK429 (SSK429Q) /CSM/SS/SSK4-B/SSK429Q.Seq.d/                       1158   0.0
SSM345 (SSM345Q) /CSM/SS/SSM3-B/SSM345Q.Seq.d/                       1120   0.0
VSA193 (VSA193Q) /CSM/VS/VSA1-D/VSA193Q.Seq.d/                        920   0.0
SSM262 (SSM262Q) /CSM/SS/SSM2-C/SSM262Q.Seq.d/                        920   0.0
SSF727 (SSF727Q) /CSM/SS/SSF7-B/SSF727Q.Seq.d/                        920   0.0
SSA604 (SSA604Q) /CSM/SS/SSA6-A/SSA604Q.Seq.d/                        902   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U02927|U02927.1 Dictyostelium discoideum Ax3 Rab4 mRNA, complete cds.   837   0.0    3
BI394576| (AL162081) hypothetical protein [Ho, mRNA sequence.    68   6e-23  4
AJ447472|AJ447472.1 Gallus gallus EST, clone library riken1, clone 16l20r1.    68   8e-23  4
AJ448404|AJ448404.1 Gallus gallus EST, clone library riken1, clone 19m10r1.    68   1e-22  4
BU230962|BU230962.1 603399161F1 CSEQCHN23 Gallus gallus cDNA clone ChEST291i15 5', mRNA sequence.    68   1e-22  4
BP460824|BP460824.1 Sus scrofa mRNA, clone:OVRM10147G06, 5' end, expressed in ovary.    58   2e-22  5
AJ451757|AJ451757.1 Gallus gallus EST, clone library riken1, clone 29n17r1.    68   1e-21  4
BQ194903|BQ194903.1 UI-R-CN1-cmb-p-04-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone UI-R-CN1-cmb-p-04-0-UI 3', mRNA sequence.    46   7e-21  5
BU283659|BU283659.1 603602047F1 CSEQCHN54 Gallus gallus cDNA clone ChEST578m12 5', mRNA sequence.    68   1e-20  3
BU326902|BU326902.1 603491746F1 CSEQCHN63 Gallus gallus cDNA clone ChEST395k11 5', mRNA sequence.    68   1e-20  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02927_1(U02927|pid:none) Dictyostelium discoideum Ax3 Rab4 mRNA...   402   e-111
(P61107) RecName: Full=Ras-related protein Rab-14;  &(Q52NJ6) Re...   305   7e-82
DQ414565_1(DQ414565|pid:none) Suberites domuncula Rab14 gene, pa...   304   1e-81
BT045578_1(BT045578|pid:none) Salmo salar clone ssal-rgf-525-209...   304   2e-81
BC045374_1(BC045374|pid:none) Danio rerio RAB14, member RAS onco...   303   3e-81
AJ968959_1(AJ968959|pid:none) Mus musculus mRNA for RAB14 protei...   303   4e-81
E42148(E42148)GTP-binding protein rab14 - rat                         301   8e-81
BC058341_1(BC058341|pid:none) Danio rerio RAB14, member RAS onco...   300   2e-80
AL137068_10(AL137068|pid:none) Human DNA sequence from clone RP1...   297   2e-79
T23530(T23530) hypothetical protein K09A9.2 - Caenorhabditis ele...   293   2e-78

 psg: 0.80  gvh: 0.28  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.50  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: cytoskeletal
	 24.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSF373 is cyt

>SSF373F.Seq
CAGAATGTCATTTCCATATGAATATATATTTAAATACATCATTATTGGTGATATGGGTGT
AGGTAAATCATGTCTCCTTCACCAATTCACTGAAAATAAATTCGTCCCAGATTCACCACA
TACAATTGGTGTAGAGTTTGGTACAAGAATTGTAGATGTAAATAATAAAAAAATTAAATT
ACAAATTTGGGATACTGCAGGTCAAGAAAGATTCAGGGCAGTTACACGTTCATATTATAG
AGGTGCAGCAGGTGCATTATTAGTTTATGATATTACAAGAAGAATTACATACAACCACTT
AACCACTTGGTTAACTGATGCTAGAAATCTTACTAATCCAAACACTGTCATCATGTTAAT
TGGTAACAAAAAAGATTTGGAAGGTCAAAGAGATGTCACCTATGAAGAGGCTTCTGCTTT
TGCAAAACAAAATGGTTTAATTTTTGTGGAATCTAGTGCAAAAACTGGTGAGAATGTAGA
AGAAGCTTTCTTAAGAACTGCTAAATTAATTTTCCAAAGCGTTCAAGAGGGTAATGTTGA
TCTCATCCCGGATGGAGGTATTACCAAGAACCCACCACAAACCATCACTGATAAACCTCA
AGATGCCAGTAAATGTTCTTGTTAATAAAATTTTAAAAAA----------