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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF371
Library SS
(Link to library)
Clone ID SSF371
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13938-1
Original site URL
Representative seq. ID SSF371E
(Link to Original site)
Representative DNA sequence 
>SSF371 (SSF371Q) /CSM/SS/SSF3-C/SSF371Q.Seq.d/
AAAAAAAAAAAAAAAAAAAAAAAAGTAAAGTAAAGAAATGGAAAAATTTCAAAGAGAATT
AACAGATCAAGCAATTAAAAAGATTGTTTCAACATTAAGATCAATTTTATATAGAATAGA
AACTAAAGACTGTAAAGATGTTGTTGGTTTATTAGAACCATATATGGATGAAGAATCTTA
TCAAAATATTAGAGAGACATTTTTAAGATATCAAGAGAAACATAGATTAAATGAATTTGC
AGATGATGAAGAGGATATTTTAGAAGATGAAGAAGAGGATGAAGATGAAGATAATATAAA
TAAAAATATAGATGATAACACCACCTCCACCACCAACAAATGTGGTGTTAATGGCATTGA
AAATATATCAAATAAATATTTATTACAAATTCAAGATGTTGCAGCAAGATCATCATCAAC
TGCATCAGCATCAACTTCAAATGGTAGTGGTTCCAATGGTGAAAGTGGCACCACTCGTTA
TAATAGAATTGCAGATAGACAATCACGTGAAAATAGCTCACAAAGCTCAAATGGTGGTGG
TGGTGGTGGTAGTGGTGAGAATGGCACACGTAAAAAGAGAAGAGGTGCTTCAAAGGGATT
CCCATTGAATTGGGGTCTCATCATGTCAATGGCCTCAAATATCACACTCGATCAAGTTCA
ATCAATGCTCAATGTACTCATTATGGTTTTATCTCGTACTCCAATCAACGTACTCTTCAA
ACAATTCCATGNATTGAATATAAATTCATCATCTCCTCTGTTTTCGATCTTTTAAATGCA
ATACTTCGTGGTGATATCAAAGATATTGGCACTTGTCTCATCATTGCTGTCATTGGTGTC
ATTCGTTTCTCTCAACGTAAAAATTTAACTTTAATTACAACTTTGGAAGTTGCAAAATAT
CTTTACAATTCTGGTAACAAAAAGAAGTTTGGTTTAATCAGATCTGTTTCATTGGTTGCT
TTCCTTTCCAACCTTTTCAAACTTGTAAATCCACCACCAGTAACTCCATTAGATGTTATA
CAATTAGTTAAATCCCAAATTCAATCAAGATTATAAATCCTTCTTTTTTTTTAAAAAAAA
TAAAAT
sequence update 1999. 4. 7
Translated Amino Acid sequence 
kkkkkkkk*SKEMEKFQRELTDQAIKKIVSTLRSILYRIETKDCKDVVGLLEPYMDEESY
QNIRETFLRYQEKHRLNEFADDEEDILEDEEEDEDEDNINKNIDDNTTSTTNKCGVNGIE
NISNKYLLQIQDVAARSSSTASASTSNGSGSNGESGTTRYNRIADRQSRENSSQSSNGGG
GGGSGENGTRKKRRGASKGFPLNWGLIMSMASNITLDQVQSMLNVLIMVLSRTPINVLFK
QFHXLNINSSSPLFSIF*mqyfvviskilalvssllslvsfvslnvki*l*lqlwklqni
ftilvtkrslv*sdlfhwllsfptfsnl*ihhq*lh*mlyn*lnpkfnqdyksffffkkn
k
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkkkkkvk*rngkiskrinrssn*kdcfnikinfi*nrn*rl*rccwfirtiyg*ril
sky*rdifkisret*ik*icr**rgyfrr*rrg*r*r*yk*kyr**hhlhhqqmwc*wh*
kyik*ifitnsrccskiiincisinfkw*wfqw*kwhhsl**ncr*tit*k*ltklkwww
www*w*ewht*kekrcfkgipielgshhvnglkyhtrsssinaqcthygfisysnqrtlq
tipxieykfiissvfdllnailrgdikdigtcliiavigvirfsqrknltlittlevaky
lynsgnkkkfglirsvslvaflsnlfklvnpppvtpldviqlvksqiqsrl*illff*kk
*n


Frame B:
kkkkkkkk*SKEMEKFQRELTDQAIKKIVSTLRSILYRIETKDCKDVVGLLEPYMDEESY
QNIRETFLRYQEKHRLNEFADDEEDILEDEEEDEDEDNINKNIDDNTTSTTNKCGVNGIE
NISNKYLLQIQDVAARSSSTASASTSNGSGSNGESGTTRYNRIADRQSRENSSQSSNGGG
GGGSGENGTRKKRRGASKGFPLNWGLIMSMASNITLDQVQSMLNVLIMVLSRTPINVLFK
QFHXLNINSSSPLFSIF*mqyfvviskilalvssllslvsfvslnvki*l*lqlwklqni
ftilvtkrslv*sdlfhwllsfptfsnl*ihhq*lh*mlyn*lnpkfnqdyksffffkkn
k


Frame C:
kkkkkkkskvkkwknfken*qikqlkrlfqh*dqfyie*klktvkmllvy*nhiwmknli
kilerhf*dikrnid*mnlqmmkrif*kmkkrmkmkii*iki*mitppppptnvvlmalk
iyqiniyykfkmlqqdhhqlhqhqlqmvvvpmvkvaplviielqidnhvkiahkaqmvvv
vvvvvrmahvkreevlqrdsh*igvsscqwpqishsikfnqcsmyslwfylvlqstyssn
nsmx*i*ihhllcfrsfkcntsw*yqrywhlshhcchwchsflst*kfnfnynfgsckis
lqfw*qkevwfnqicfigcfpfqpfqtcksttsnsircytis*ipnsikiinpsfflkki
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF371 (SSF371Q) /CSM/SS/SSF3-C/SSF371Q.Seq.d/                       1005   0.0
SSK591 (SSK591Q) /CSM/SS/SSK5-D/SSK591Q.Seq.d/                        971   0.0
AHB792 (AHB792Q) /CSM/AH/AHB7-D/AHB792Q.Seq.d/                        971   0.0
SSH222 (SSH222Q) /CSM/SS/SSH2-A/SSH222Q.Seq.d/                        963   0.0
AFM785 (AFM785Q) /CSM/AF/AFM7-D/AFM785Q.Seq.d/                        963   0.0
SFJ750 (SFJ750Q) /CSM/SF/SFJ7-C/SFJ750Q.Seq.d/                        892   0.0
AFH581 (AFH581Q) /CSM/AF/AFH5-D/AFH581Q.Seq.d/                        773   0.0
SFH533 (SFH533Q) /CSM/SF/SFH5-B/SFH533Q.Seq.d/                        728   0.0
FC-IC1775 (FC-IC1775Q) /CSM/FC-IC/FC-IC1775Q.Seq.d/                   642   0.0
SFJ850 (SFJ850Q) /CSM/SF/SFJ8-C/SFJ850Q.Seq.d/                        618   e-176
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   765  0.0  5
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    52  1e-04  9
BM159494|BM159494.1 EST562017 PyBS Plasmodium yoelii yoelii cDNA clone PYCJE81 5' end, mRNA sequence.    58  2e-04  1
BM160691|BM160691.1 EST563214 PyBS Plasmodium yoelii yoelii cDNA clone PYCJU52 5' end, mRNA sequence.    58  2e-04  1
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    54  3e-04  4
CF186559|CF186559.1 j4o01j2.f1 Cryptococcus neoformans strain B3501 Cryptococcus neoformans var. neoformans cDNA clone j4o01j2 3', mRNA sequence.    44  3e-04  2
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    52  8e-04  6
BM163814|BM163814.1 EST566337 PyBS Plasmodium yoelii yoelii cDNA clone PYCLK05 5' end, mRNA sequence.    44  0.002  2
CD371927|CD371927.1 UI-R-GO0-csj-b-18-0-UI.r1 UI-R-GO0 Rattus norvegicus cDNA clone UI-R-GO0-csj-b-18-0-UI 5', mRNA sequence.    50  0.002  2
CF108341|CF108341.1 Shultzomica01592 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig1261 5', mRNA sequence.    50  0.002  2
dna update 2003. 8.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_68(AC116979|pid:none) Dictyostelium discoideum chromoso...   277   e-127
protein update 2009. 3. 5
PSORT 

 psg: 0.52  gvh: 0.32  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSF371 is nuc
5' end seq. ID SSF371F
5' end seq. 
>SSF371F.Seq
AAAAAAAAAAAAAAAAAAAAAAAAGTAAAGTAAAGAAATGGAAAAATTTCAAAGAGAATT
AACAGATCAAGCAATTAAAAAGATTGTTTCAACATTAAGATCAATTTTATATAGAATAGA
AACTAAAGACTGTAAAGATGTTGTTGGTTTATTAGAACCATATATGGATGAAGAATCTTA
TCAAAATATTAGAGAGACATTTTTAAGATATCAAGAGAAACATAGATTAAATGAATTTGC
AGATGATGAAGAGGATATTTTAGAAGATGAAGAAGAGGATGAAGATGAAGATAATATAAA
TAAAAATATAGATGATAACACCACCTCCACCACCAACAAATGTGGTGTTAATGGCATTGA
AAATATATCAAATAAATATTTATTACAAATTCAAGATGTTGCAGCAAGATTGGTTTCATC
ATCAACTGCATCAGCATCAACTTCAAATGGTAGTGGTTCCAATGGTGAAAGTGGCACCAC
TCGTTATAATAGAATTGCAGATAGACAATCACGTGAAAATAGCTCACAAAGCTCAAATGG
TGGTGGTGGTGGTGGTAGTGGTGAGAATGGCACACGTAAAAAGAGAAGAGGTGCTTCAAA
GGGATTCCCATTGAATTGGGGTCTCATCATGTCAATGGCCTCAAATATCACACTCGATCA
AGTTCAATCAATGCTCAATGTACTCATTATGGTTTTATCTCGTACTCCAATCAACGTACT
CTTCAAACAATTCCATGGAT----------
Length of 5' end seq. 740
3' end seq. ID SSF371Z
3' end seq. 
>SSF371Z.Seq
----------TCATCATCAACTGCATCAGCATCAACTTCAAATGGTAGTGGTTCCAATGG
TGAAAGTGGCACCACTCGTTATAATAGAATTGCAGATAGACAATCACGTGAAAATAGCTC
ACAAAGCTCAAATGGTGGTGGTGGTGGTGGTAGTGGTGAGAATGGCACACGTAAAAAGAG
AAGAGGTGCTTCAAAGGGATTCCCATTGAATTGGGGTCTCATCATGTCAATGGCCTCAAA
TATCACACTCGATCAAGTTCAATCAATGCTCAATGTACTCATTATGGTTTTATCTCGTAC
TCCAATCAACGTACTCTTCAAACAATTCCATGAATATAAATTCATCATCTCCTCTGTTTT
CGATCTTTTAAATGCAATACTTCGTGGTGATATCAAAGATATTGGCACTTGTCTCATCAT
TGCTGTCATTGGTGTCATTCGTTTCTCTCAACGTAAAAATTTAACTTTAATTACAACTTT
GGAAGTTGCAAAATATCTTTACAATTCTGGTAACAAAAAGAAGTTTGGTTTAATCAGATC
TGTTTCATTGGTTGCTTTCCTTTCCAACCTTTTCAAACTTGTAAATCCACCACCAGTAAC
TCCATTAGATGTTATACAATTAGTTAAATCCCAAATTCAATCAAGATTATAAATCCTTCT
TTTTTTTTAAAAAAAATAAAATAAAATAAAATA
Length of 3' end seq. 683
Connected seq. ID SSF371P
Connected seq. 
>SSF371P.Seq
AAAAAAAAAAAAAAAAAAAAAAAAGTAAAGTAAAGAAATGGAAAAATTTCAAAGAGAATT
AACAGATCAAGCAATTAAAAAGATTGTTTCAACATTAAGATCAATTTTATATAGAATAGA
AACTAAAGACTGTAAAGATGTTGTTGGTTTATTAGAACCATATATGGATGAAGAATCTTA
TCAAAATATTAGAGAGACATTTTTAAGATATCAAGAGAAACATAGATTAAATGAATTTGC
AGATGATGAAGAGGATATTTTAGAAGATGAAGAAGAGGATGAAGATGAAGATAATATAAA
TAAAAATATAGATGATAACACCACCTCCACCACCAACAAATGTGGTGTTAATGGCATTGA
AAATATATCAAATAAATATTTATTACAAATTCAAGATGTTGCAGCAAGATTGGTTTCATC
ATCAACTGCATCAGCATCAACTTCAAATGGTAGTGGTTCCAATGGTGAAAGTGGCACCAC
TCGTTATAATAGAATTGCAGATAGACAATCACGTGAAAATAGCTCACAAAGCTCAAATGG
TGGTGGTGGTGGTGGTAGTGGTGAGAATGGCACACGTAAAAAGAGAAGAGGTGCTTCAAA
GGGATTCCCATTGAATTGGGGTCTCATCATGTCAATGGCCTCAAATATCACACTCGATCA
AGTTCAATCAATGCTCAATGTACTCATTATGGTTTTATCTCGTACTCCAATCAACGTACT
CTTCAAACAATTCCATGGAT----------TCATCATCAACTGCATCAGCATCAACTTCA
AATGGTAGTGGTTCCAATGGTGAAAGTGGCACCACTCGTTATAATAGAATTGCAGATAGA
CAATCACGTGAAAATAGCTCACAAAGCTCAAATGGTGGTGGTGGTGGTGGTAGTGGTGAG
AATGGCACACGTAAAAAGAGAAGAGGTGCTTCAAAGGGATTCCCATTGAATTGGGGTCTC
ATCATGTCAATGGCCTCAAATATCACACTCGATCAAGTTCAATCAATGCTCAATGTACTC
ATTATGGTTTTATCTCGTACTCCAATCAACGTACTCTTCAAACAATTCCATGAATATAAA
TTCATCATCTCCTCTGTTTTCGATCTTTTAAATGCAATACTTCGTGGTGATATCAAAGAT
ATTGGCACTTGTCTCATCATTGCTGTCATTGGTGTCATTCGTTTCTCTCAACGTAAAAAT
TTAACTTTAATTACAACTTTGGAAGTTGCAAAATATCTTTACAATTCTGGTAACAAAAAG
AAGTTTGGTTTAATCAGATCTGTTTCATTGGTTGCTTTCCTTTCCAACCTTTTCAAACTT
GTAAATCCACCACCAGTAACTCCATTAGATGTTATACAATTAGTTAAATCCCAAATTCAA
TCAAGATTATAAATCCTTCTTTTTTTTTAAAAAAAATAAAATAAAATAAAATA
Length of connected seq. 1423
Full length Seq ID SSF371E
Full length Seq. 
>SSF371E.Seq
AAAAAAAAAAAAAAAAAAAAAAAAGTAAAGTAAAGAAATGGAAAAATTTCAAAGAGAATT
AACAGATCAAGCAATTAAAAAGATTGTTTCAACATTAAGATCAATTTTATATAGAATAGA
AACTAAAGACTGTAAAGATGTTGTTGGTTTATTAGAACCATATATGGATGAAGAATCTTA
TCAAAATATTAGAGAGACATTTTTAAGATATCAAGAGAAACATAGATTAAATGAATTTGC
AGATGATGAAGAGGATATTTTAGAAGATGAAGAAGAGGATGAAGATGAAGATAATATAAA
TAAAAATATAGATGATAACACCACCTCCACCACCAACAAATGTGGTGTTAATGGCATTGA
AAATATATCAAATAAATATTTATTACAAATTCAAGATGTTGCAGCAAGATCATCATCAAC
TGCATCAGCATCAACTTCAAATGGTAGTGGTTCCAATGGTGAAAGTGGCACCACTCGTTA
TAATAGAATTGCAGATAGACAATCACGTGAAAATAGCTCACAAAGCTCAAATGGTGGTGG
TGGTGGTGGTAGTGGTGAGAATGGCACACGTAAAAAGAGAAGAGGTGCTTCAAAGGGATT
CCCATTGAATTGGGGTCTCATCATGTCAATGGCCTCAAATATCACACTCGATCAAGTTCA
ATCAATGCTCAATGTACTCATTATGGTTTTATCTCGTACTCCAATCAACGTACTCTTCAA
ACAATTCCATGNATTGAATATAAATTCATCATCTCCTCTGTTTTCGATCTTTTAAATGCA
ATACTTCGTGGTGATATCAAAGATATTGGCACTTGTCTCATCATTGCTGTCATTGGTGTC
ATTCGTTTCTCTCAACGTAAAAATTTAACTTTAATTACAACTTTGGAAGTTGCAAAATAT
CTTTACAATTCTGGTAACAAAAAGAAGTTTGGTTTAATCAGATCTGTTTCATTGGTTGCT
TTCCTTTCCAACCTTTTCAAACTTGTAAATCCACCACCAGTAACTCCATTAGATGTTATA
CAATTAGTTAAATCCCAAATTCAATCAAGATTATAAATCCTTCTTTTTTTTTAAAAAAAA
TAAAAT
Length of full length seq. 1086