>SSF320 (SSF320Q) /CSM/SS/SSF3-A/SSF320Q.Seq.d/
XXXXXXXXXXCATTCTTTGAAGGAGGTGTAATTAGTGCAGATTTCAAATCTCAACAAATG
TATGTCCATTTTGGATTAGTTGCTGGTAATTCGACTGTTTGGGGTAAATATTGGGGATTT
GGTTCAAATAGTACTGAATATGTTTTAATAAATGGTACATGCACTTCAAACAAATTATCA
TATCCATTCCCACCTTCTGTTCCAAAATTCAAGAAAGTTGGTGAAACTAAAATTGGTCAA
ATAGATGTTGATGTAGTTATTATGAAACACCAAGAAAAGTATAATAACTATACCAGACAA
TGCACATTAATTCAAAAAGGTACTTGCACACCAATGTCAAATAATGTTGGTAATATTGAT
AAATCAAACAAGGGTTTCACTTTAATGAATTTCTACAAATATGAAGGAAAAGCTCGTAAA
GATAAATTCCAATTACCATCAGAATGTTATGGTGTTCAACCAAGTGACTCAACTTCATCC
TTTAGAATCAATACAAATAATGTTGCTCAAAATGTTCTTGGTCATAATGAAGATGAACCA
AATAAAAAACAACAAAAAACATTACCAAAATCAATTCCTTTCCATAATTTATTTTAGTAG
AAAATGAATAAATTAAAATTTTAATAAAAACCTATTTTTACATTGTGATTCACC

---FFEGGVISADFKSQQMYVHFGLVAGNSTVWGKYWGFGSNSTEYVLINGTCTSNKLSY
PFPPSVPKFKKVGETKIGQIDVDVVIMKHQEKYNNYTRQCTLIQKGTCTPMSNNVGNIDK
SNKGFTLMNFYKYEGKARKDKFQLPSECYGVQPSDSTSSFRINTNNVAQNVLGHNEDEPN
KKQQKTLPKSIPFHNLF**kmnklkf**kpiftl*ft

Frame A:
---il*rrcn*crfqistnvcpfwiscw*fdclg*ilgiwfk*y*icfnkwymhfkqiii
siptfcskiqesw*n*nwsnrc*csyyetprkv**lyqtmhinskrylhtnvk*cw*y**
ikqgfhfneflqi*rkss*r*ipitirmlwcstk*lnfil*nqyk*ccskcsws**r*tk
*kttknitkinsfp*filvene*ikiliktyfyivih


Frame B:
---FFEGGVISADFKSQQMYVHFGLVAGNSTVWGKYWGFGSNSTEYVLINGTCTSNKLSY
PFPPSVPKFKKVGETKIGQIDVDVVIMKHQEKYNNYTRQCTLIQKGTCTPMSNNVGNIDK
SNKGFTLMNFYKYEGKARKDKFQLPSECYGVQPSDSTSSFRINTNNVAQNVLGHNEDEPN
KKQQKTLPKSIPFHNLF**kmnklkf**kpiftl*ft


Frame C:
---slkev*lvqisnlnkcmsild*llvirlfgvnigdlvqivlnmf**mvhalqtnyhi
hshllfqnsrklvklklvk*mlm*ll*ntkksiitipdnah*fkkvlahqcqimlvilin
qtrvsl**istnmkeklvkinsnyhqnvmvfnqvtqlhplesiqimllkmflvimkmnqi
knnkkhyqnqflsiiyfsrk*in*nfnknlflhcds

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI253 (SSI253Q) /CSM/SS/SSI2-C/SSI253Q.Seq.d/                       1047   0.0
SSF320 (SSF320Q) /CSM/SS/SSF3-A/SSF320Q.Seq.d/                       1047   0.0
SSE702 (SSE702Q) /CSM/SS/SSE7-A/SSE702Q.Seq.d/                       1047   0.0
SHE803 (SHE803Q) /CSM/SH/SHE8-A/SHE803Q.Seq.d/                       1047   0.0
SSG272 (SSG272Q) /CSM/SS/SSG2-C/SSG272Q.Seq.d/                       1039   0.0
SSD101 (SSD101Q) /CSM/SS/SSD1-A/SSD101Q.Seq.d/                       1035   0.0
SSA444 (SSA444Q) /CSM/SS/SSA4-B/SSA444Q.Seq.d/                       1017   0.0
SSM257 (SSM257Q) /CSM/SS/SSM2-C/SSM257Q.Seq.d/                        969   0.0
SSC541 (SSC541Q) /CSM/SS/SSC5-B/SSC541Q.Seq.d/                        936   0.0
SSK225 (SSK225Q) /CSM/SS/SSK2-B/SSK225Q.Seq.d/                        922   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   3e-05  25
AX344566|AX344566.1 Sequence 17 from Patent WO0200932.             40   9e-04  13
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38   0.001  12
BX927074|BX927074.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-7L12.    38   0.001  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.001  17
Z81588|Z81588.1 Caenorhabditis elegans cosmid T07D10.              36   0.002  5
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    36   0.003  12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    32   0.003  12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.005  15
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    32   0.008  12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116550_6(AC116550|pid:none) Dictyostelium discoideum chromosom...    80   4e-14
AC116550_3(AC116550|pid:none) Dictyostelium discoideum chromosom...    79   9e-14
AX647673_1(AX647673|pid:none) Sequence 1865 from Patent EP1270724.     35   2.5
AE017224_1001(AE017224|pid:none) Brucella abortus biovar 1 str. ...    34   3.2
AE008918_154(AE008918|pid:none) Brucella melitensis 16M chromoso...    34   3.2
CP000873_1093(CP000873|pid:none) Brucella canis ATCC 23365 chrom...    34   3.2
AE014187_226(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.2
AE015928_3339(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    34   4.2
T22814(T22814) hypothetical protein F57A10.1 - Caenorhabditis el...    33   5.5
T25150(T25150) hypothetical protein T23D5.11 - Caenorhabditis el...    33   5.5

 psg: 0.75  gvh: 0.49  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SSF320 is nuc

>SSF320Z.Seq
----------CATTCTTTGAAGGAGGTGTAATTAGTGCAGATTTCAAATCTCAACAAATG
TATGTCCATTTTGGATTAGTTGCTGGTAATTCGACTGTTTGGGGTAAATATTGGGGATTT
GGTTCAAATAGTACTGAATATGTTTTAATAAATGGTACATGCACTTCAAACAAATTATCA
TATCCATTCCCACCTTCTGTTCCAAAATTCAAGAAAGTTGGTGAAACTAAAATTGGTCAA
ATAGATGTTGATGTAGTTATTATGAAACACCAAGAAAAGTATAATAACTATACCAGACAA
TGCACATTAATTCAAAAAGGTACTTGCACACCAATGTCAAATAATGTTGGTAATATTGAT
AAATCAAACAAGGGTTTCACTTTAATGAATTTCTACAAATATGAAGGAAAAGCTCGTAAA
GATAAATTCCAATTACCATCAGAATGTTATGGTGTTCAACCAAGTGACTCAACTTCATCC
TTTAGAATCAATACAAATAATGTTGCTCAAAATGTTCTTGGTCATAATGAAGATGAACCA
AATAAAAAACAACAAAAAACATTACCAAAATCAATTCCTTTCCATAATTTATTTTAGTAG
AAAATGAATAAATTAAAATTTTAATAAAAACCTATTTTTACATTGTGATTCACC