>SSF318 (SSF318Q) /CSM/SS/SSF3-A/SSF318Q.Seq.d/
XXXXXXXXXXCATTACCATTAGGTAACCCAGCATCAGCAACTGATAAATATTATATTTTT
GGTGATAATGGTGTCAGATGTGTCACTACCCCATGTGCATCAACAGATGCAGTTTTATTG
AATATCCGTACTAAACAAACTGTTAGTGATATACTCATGCCATATTCAAAGAACGTTGGT
AAATATTTTGATTCTGCATGGTTAGGATCTAAAACAGTTAGATCAGATGACTATGGTTTA
ATCGGTCAAGGTACATTCAGTAGTGGAAAAATTACAATATCAAATGCTTTCATTCATTTA
CCAGATCCAATTGGTAAATGTGATTCATTGCCATTATTAAAATGTCCAGGTGGTTCGATT
ATGACATACTCTCGTAATGAAAATCGTTGTTTAGCTTCTCCAACTTGCACTCAATCTTCA
TTCTGTACCTTGGGTATGCCACTTTGTCCAGCAGGTTATCGTTTAGATCAATTCAGAGCA
ACTGAAGCAAATGGATGTCCAAAATATTATTGTGATCCAACCTTTGTTTGTAAAACACAT
TAATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAAAAAAAAAAAAAATAAAAAAAAAA
TAAACACCTCCTTTTTTATTATT

---LPLGNPASATDKYYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGK
YFDSAWLGSKTVRSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIM
TYSRNENRCLASPTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*
flfllif*tivkkkkikkk*tppfll

Frame A:
---itir*psisn**ilyfw**wcqmchypmcinrcsfieypy*tnc**ythaifkerw*
if*fcmvri*ns*ir*lwfnrsryiq*wknynikcfhsftrsnw*m*fiaiikmsrwfdy
dils**kslfsfsnlhsifilylgyatlssrlsfrsiqsn*skwmskill*snlcl*ntl
isffvnflnnckkkknkkkintsffii


Frame B:
---LPLGNPASATDKYYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGK
YFDSAWLGSKTVRSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIM
TYSRNENRCLASPTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*
flfllif*tivkkkkikkk*tppfll


Frame C:
---yh*vtqhqqliniiflvimvsdvslphvhqqmqfy*isvlnkllviyschiqrtlvn
ililhg*dlkqldqmtmv*svkvhsvveklqyqmlsfiyqiqlvnvihchy*nvqvvrl*
htlvmkivv*llqlalnlhsvpwvchfvqqviv*inseqlkqmdvqniiviqplfvkhin
fffc*fskql*kkkk*kknkhllfyy

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM285 (SSM285Q) /CSM/SS/SSM2-D/SSM285Q.Seq.d/                       1078   0.0
SSM240 (SSM240Q) /CSM/SS/SSM2-B/SSM240Q.Seq.d/                       1078   0.0
SSK447 (SSK447Q) /CSM/SS/SSK4-B/SSK447Q.Seq.d/                       1078   0.0
SSJ224 (SSJ224Q) /CSM/SS/SSJ2-A/SSJ224Q.Seq.d/                       1078   0.0
SSI294 (SSI294Q) /CSM/SS/SSI2-D/SSI294Q.Seq.d/                       1078   0.0
SSG158 (SSG158Q) /CSM/SS/SSG1-C/SSG158Q.Seq.d/                       1078   0.0
SSG136 (SSG136Q) /CSM/SS/SSG1-B/SSG136Q.Seq.d/                       1078   0.0
SSF491 (SSF491Q) /CSM/SS/SSF4-D/SSF491Q.Seq.d/                       1078   0.0
SSF318 (SSF318Q) /CSM/SS/SSF3-A/SSF318Q.Seq.d/                       1078   0.0
SSE726 (SSE726Q) /CSM/SS/SSE7-B/SSE726Q.Seq.d/                       1078   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   948   0.0    11
AC006690|AC006690.3 Caenorhabditis elegans cosmid T24F3, complete sequence.    40   0.004  2
AL109748|AL109748.2 Homo sapiens chromosome 21 PAC RPCIP704M13256Q2.    48   0.15   1
AL050303|AL050303.4 Homo sapiens chromosome 21 PAC RPCIP704G14214Q2.    48   0.15   1
AL163204|AL163204.1 Homo sapiens genomic DNA, chromosome 21q, section 3/105.    48   0.15   1
AL162851|AL162851.7 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-186M12.    48   0.15   1
AC106402|AC106402.4 Rattus norvegicus clone CH230-130H6, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    40   0.25   2
AL445884|AL445884.4 Human chromosome 14 DNA sequence BAC R-419C10 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    36   0.48   3
BS000003|BS000003.1 Pan troglodytes chromosome 22 clone:PTB-084L06, map 22, complete sequences.    46   0.59   1
AC119797|AC119797.2 Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence.    46   0.59   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   369   e-101
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   231   2e-59
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   161   1e-38
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    78   2e-13
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re...    43   0.006
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    43   0.008
CP000934_2920(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    41   0.023
AL033501_6(AL033501|pid:none) C.albicans cosmid Ca41C10.  &T1823...    37   0.44
CP000282_3256(CP000282|pid:none) Saccharophagus degradans 2-40, ...    35   1.3
FM992688_766(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   1.7

 psg: 0.75  gvh: 0.40  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSF318 is cyt

>SSF318Z.Seq
----------CATTACCATTAGGTAACCCAGCATCAGCAACTGATAAATATTATATTTTT
GGTGATAATGGTGTCAGATGTGTCACTACCCCATGTGCATCAACAGATGCAGTTTTATTG
AATATCCGTACTAAACAAACTGTTAGTGATATACTCATGCCATATTCAAAGAACGTTGGT
AAATATTTTGATTCTGCATGGTTAGGATCTAAAACAGTTAGATCAGATGACTATGGTTTA
ATCGGTCAAGGTACATTCAGTAGTGGAAAAATTACAATATCAAATGCTTTCATTCATTTA
CCAGATCCAATTGGTAAATGTGATTCATTGCCATTATTAAAATGTCCAGGTGGTTCGATT
ATGACATACTCTCGTAATGAAAATCGTTGTTTAGCTTCTCCAACTTGCACTCAATCTTCA
TTCTGTACCTTGGGTATGCCACTTTGTCCAGCAGGTTATCGTTTAGATCAATTCAGAGCA
ACTGAAGCAAATGGATGTCCAAAATATTATTGTGATCCAACCTTTGTTTGTAAAACACAT
TAATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAAAAAAAAAAAAAATAAAAAAAAAA
TAAACACCTCCTTTTTTATTATT