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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF313
Library SS
(Link to library)
Clone ID SSF313
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14714-1
Original site URL
Representative seq. ID SSF313E
(Link to Original site)
Representative DNA sequence 
>SSF313 (SSF313Q) /CSM/SS/SSF3-A/SSF313Q.Seq.d/
GTATTCTATAAATACAAAACTATTTTTTATTGTTTTCTTCTTTTTTTTTTTTATTATTAT
TTTTCAAAAGTTTTTTTTTTTTATACCAATTATACATTTTAATTTATTATATTATAAACA
AAGTTACCATGACAGAATCAGAAACAACATCAAAAAGTTAACAAAAGAGTTAAACCAGTA
CCTAAATCAACTAAAGCAGGTTTGATTTTCCCAGTTGGTAGAATTCATAGAATGTTAAAG
AATAAAGTACCNTTAAAGAGAGTATCAATTCTATCGTCAGTTTATTTAGCAGCAATTTTA
GAGTATTTAGCATCAGAGGTATTAGAATTAACCATCTCACAAGTTTCAATTCAATCTAAA
GAATATCACAATGTANGAAGAATTTCACCACGTCATTTACTTTTAGCAATTAAAACTGAT
GAAGAATTAGATAATTTAATTAGAGTTTCAACAACAATTGCTGGTGGTGGTGTCATCCCA
TACATTCATGAAGTTTTGAAAAAGGTTGAACAAAAACCAACTCATCCACAACAAAAACAA
ACAATTAAATCAATTTAAAAATTATAATAATAATAAAGAATAATTTTTAAAAAAAAAAAA
AAAAAAAAACAAAAAAAAAACAAAAAAAAAAAAAAAGTAAAAAAAGTAAAATTATTTATA
AAAATAGATTTCAAAC
sequence update 1999. 4. 6
Translated Amino Acid sequence 
vfykyktifycfllfffyyyfskvfffytnytf*fiil*tklp*QNQKQHQKVNKRVKPV
PKSTKAGLIFPVGRIHRMLKNKVPLKRVSILSSVYLAAILEYLASEVLELTISQVSIQSK
EYHNVXRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVLKKVEQKPTHPQQKQ
TIKSI*kl****riifkkkkkkkqkknkkkkkvkkvklfikidfk
Translated Amino Acid sequence (All Frames) 
Frame A:
vfykyktifycfllfffyyyfskvfffytnytf*fiil*tklp*QNQKQHQKVNKRVKPV
PKSTKAGLIFPVGRIHRMLKNKVPLKRVSILSSVYLAAILEYLASEVLELTISQVSIQSK
EYHNVXRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVLKKVEQKPTHPQQKQ
TIKSI*kl****riifkkkkkkkqkknkkkkkvkkvklfikidfk


Frame B:
ysintklffivffffffiiifqkffffipiihfnllyykqsyhdrirnnikkltkelnqy
lnqlkqv*fsqlvefiec*rikyx*reyqfyrqfi*qqf*si*hqry*n*pshkfqfnlk
nitmxeefhhviyf*qlklmkn*ii*lefqqqllvvvsshtfmkf*krlnknqlihnknk
qlnqfknynnnke*flkkkkkknkkktkkkkk*kk*nyl*k*isn


Frame C:
il*iqnyfllfssffflllffksffflyqlyiliyyiinkvtmtesettsks*qks*tst
*in*srfdfpsw*ns*nvke*stxkesinsivslfssnfrvfsirgirinhltsfnsi*r
isqcxknfttsftfsn*n**rir*fn*sfnnncwwwchpihs*sfekg*tktnssttktn
n*inlkiiiiiknnf*kkkkkktkkkqkkkkskkskiiyknrfq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF313 (SSF313Q) /CSM/SS/SSF3-A/SSF313Q.Seq.d/                        811   0.0
VSD703 (VSD703Q) /CSM/VS/VSD7-A/VSD703Q.Seq.d/                        791   0.0
SSD131 (SSD131Q) /CSM/SS/SSD1-B/SSD131Q.Seq.d/                        577   e-164
VHJ628 (VHJ628Q) /CSM/VH/VHJ6-B/VHJ628Q.Seq.d/                        511   e-144
VSB873 (VSB873Q) /CSM/VS/VSB8-D/VSB873Q.Seq.d/                         40   0.043
VFO624 (VFO624Q) /CSM/VF/VFO6-A/VFO624Q.Seq.d/                         40   0.043
VFK237 (VFK237Q) /CSM/VF/VFK2-B/VFK237Q.Seq.d/                         40   0.043
VFJ888 (VFJ888Q) /CSM/VF/VFJ8-D/VFJ888Q.Seq.d/                         40   0.043
VFA754 (VFA754Q) /CSM/VF/VFA7-C/VFA754Q.Seq.d/                         40   0.043
SSC206 (SSC206Q) /CSM/SS/SSC2-A/SSC206Q.Seq.d/                         40   0.043
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BF298113|BF298113.1 060PbD12 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    52  3e-07  3
BF298182|BF298182.1 061PbD05 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    52  3e-07  3
BF298763|BF298763.1 021PbB05 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    52  3e-07  3
BM161402|BM161402.1 EST563925 PyBS Plasmodium yoelii yoelii cDNA clone PYCKE40 5' end, mRNA sequence.    50  4e-07  3
BM170310|BM170310.1 EST572833 PyBS Plasmodium yoelii yoelii cDNA clone PYCQE42 5' end, mRNA sequence.    50  4e-07  3
BM170256|BM170256.1 EST572779 PyBS Plasmodium yoelii yoelii cDNA clone PYCQD67 5' end, mRNA sequence.    50  4e-07  3
BM166835|BM166835.1 EST569358 PyBS Plasmodium yoelii yoelii cDNA clone PYCNY21 5' end, mRNA sequence.    50  5e-07  3
BF295739|BF295739.1 027PbF11 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    46  1e-05  3
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                 52  2e-05  7
AC130630|AC130630.3 Rattus norvegicus clone CH230-84K18, WORKING DRAFT SEQUENCE, 2 unordered pieces.    50  3e-05  5
dna update 2003. 8.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06725_1(X06725|pid:none) Tetrahymena macronucleus mRNA for hist...   108   1e-22
FB854219_1(FB854219|pid:none) Sequence 73492 from Patent WO20080...   107   3e-22
AK340227_1(AK340227|pid:none) Acyrthosiphon pisum ACYPI005340 mR...   106   6e-22
CR954202_17(CR954202|pid:none) Ostreococcus tauri strain OTTH059...   104   2e-21
(P70094) RecName: Full=Histone H2A.Z-like;          Short=H2A.Zl...   104   2e-21
(P08991) RecName: Full=Histone H2A.V; AltName: Full=H2A.F/Z; Fla...   104   2e-21
FB854185_1(FB854185|pid:none) Sequence 73458 from Patent WO20080...   104   2e-21
FB854195_1(FB854195|pid:none) Sequence 73468 from Patent WO20080...   104   2e-21
BT081892_1(BT081892|pid:none) Rana catesbeiana clone rcat-evr-53...   103   4e-21
(P08985) RecName: Full=Histone H2A.v; AltName: Full=H2A.F/Z;    ...   103   4e-21
protein update 2009. 7. 7
PSORT 

 psg: 0.50  gvh: 0.49  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 32.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSF313 is mit
5' end seq. ID SSF313F
5' end seq. 
>SSF313F.Seq
GTATTCTATAAATACAAAACTATTTTTTATTGTTTTCTTCTTTTTTTTTTTTATTATTAT
TTTTCAAAAGTTTTTTTTTTTTATACCAATTATACATTTTAATTTATTATATTATAAACA
AAGTTACCATGACAGAATCAGAAACAACATCAAAAAAAGTTAACAAAAGAGTTAAACCAG
TANNTAAATCAACTAAAGCAGGTTTGATTTTCCCAGTTGGTAGAATTCATAGAATGTTAA
AGAATAAAGTACCATTAAAGAGAGTATCAATTCTATCGTCAGTTTATTTAGCAGCAATTT
TAGAGTATTTAGCATCAGAGGTATTAGAATTAACCATCTCACAAGTTTCAATTCAATCTA
AAGAATATCACAATGTAAGAAGAATTTCACCACGTCATTTACTTTTAGCAATTAAAACTG
ATGAAGAATTAGATAATTTAATTAGAGTTTCAACAACAATTGCTGGTGGTGGTGTCATCC
CATACATTCATGAAGTTTTGAAAAAGGTTGAACAAAAACCAACTCATCCACAACAAAAAC
AAACAATTAAATCAATTTAAAAATTATAATA----------
Length of 5' end seq. 571
3' end seq. ID SSF313Z
3' end seq. 
>SSF313Z.Seq
----------GTTAACAAAAGAGTTAAACCAGTACCTAAATCAACTAAAGCAGGTTTGAT
TTTCCCAGTTGGTAGAATTCATAGAATGTTAAAGAATAAAGTACCCTTAAAGAGAGTATC
AATTCTATCGTCAGTTTATTTAGCAGCAATTTTAGAGTATTTAGCATCAGAGGTATTAGA
ATTAACCATCTCACAAGTTTCAATTCAATCTAAAGAATATCACAATGTAGGAAGAATTTC
ACCACGTCATTTACTTTTAGCAATTAAAACTGATGAAGAATTAGATAATTTAATTAGAGT
TTCAACAACAATTGCTGGTGGTGGTGTCATCCCATACATTCNTGAAGTTTTGAAAAAGGT
TGAACAAAAACCAACTCATCCACAACAAAAACAAACAATTAAATCAATTTAAAAATTATA
ATAAAGAATAATTTTTAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACAAAAAAAAAAA
AAAAGTAAAAAAAGTAAAATTATTTATAAAAATAGATTTCAAACAATTTCTC
Length of 3' end seq. 522
Connected seq. ID SSF313P
Connected seq. 
>SSF313P.Seq
GTATTCTATAAATACAAAACTATTTTTTATTGTTTTCTTCTTTTTTTTTTTTATTATTAT
TTTTCAAAAGTTTTTTTTTTTTATACCAATTATACATTTTAATTTATTATATTATAAACA
AAGTTACCATGACAGAATCAGAAACAACATCAAAAAAAGTTAACAAAAGAGTTAAACCAG
TANNTAAATCAACTAAAGCAGGTTTGATTTTCCCAGTTGGTAGAATTCATAGAATGTTAA
AGAATAAAGTACCATTAAAGAGAGTATCAATTCTATCGTCAGTTTATTTAGCAGCAATTT
TAGAGTATTTAGCATCAGAGGTATTAGAATTAACCATCTCACAAGTTTCAATTCAATCTA
AAGAATATCACAATGTAAGAAGAATTTCACCACGTCATTTACTTTTAGCAATTAAAACTG
ATGAAGAATTAGATAATTTAATTAGAGTTTCAACAACAATTGCTGGTGGTGGTGTCATCC
CATACATTCATGAAGTTTTGAAAAAGGTTGAACAAAAACCAACTCATCCACAACAAAAAC
AAACAATTAAATCAATTTAAAAATTATAATA----------GTTAACAAAAGAGTTAAAC
CAGTACCTAAATCAACTAAAGCAGGTTTGATTTTCCCAGTTGGTAGAATTCATAGAATGT
TAAAGAATAAAGTACCCTTAAAGAGAGTATCAATTCTATCGTCAGTTTATTTAGCAGCAA
TTTTAGAGTATTTAGCATCAGAGGTATTAGAATTAACCATCTCACAAGTTTCAATTCAAT
CTAAAGAATATCACAATGTAGGAAGAATTTCACCACGTCATTTACTTTTAGCAATTAAAA
CTGATGAAGAATTAGATAATTTAATTAGAGTTTCAACAACAATTGCTGGTGGTGGTGTCA
TCCCATACATTCNTGAAGTTTTGAAAAAGGTTGAACAAAAACCAACTCATCCACAACAAA
AACAAACAATTAAATCAATTTAAAAATTATAATAAAGAATAATTTTTAAAAAAAAAAAAA
AAAAAAAACAAAAAAAAAACAAAAAAAAAAAAAAAGTAAAAAAAGTAAAATTATTTATAA
AAATAGATTTCAAACAATTTCTC
Length of connected seq. 1093
Full length Seq ID SSF313E
Full length Seq. 
>SSF313E.Seq
GTATTCTATAAATACAAAACTATTTTTTATTGTTTTCTTCTTTTTTTTTTTTATTATTAT
TTTTCAAAAGTTTTTTTTTTTTATACCAATTATACATTTTAATTTATTATATTATAAACA
AAGTTACCATGACAGAATCAGAAACAACATCAAAAAGTTAACAAAAGAGTTAAACCAGTA
CCTAAATCAACTAAAGCAGGTTTGATTTTCCCAGTTGGTAGAATTCATAGAATGTTAAAG
AATAAAGTACCNTTAAAGAGAGTATCAATTCTATCGTCAGTTTATTTAGCAGCAATTTTA
GAGTATTTAGCATCAGAGGTATTAGAATTAACCATCTCACAAGTTTCAATTCAATCTAAA
GAATATCACAATGTANGAAGAATTTCACCACGTCATTTACTTTTAGCAATTAAAACTGAT
GAAGAATTAGATAATTTAATTAGAGTTTCAACAACAATTGCTGGTGGTGGTGTCATCCCA
TACATTCATGAAGTTTTGAAAAAGGTTGAACAAAAACCAACTCATCCACAACAAAAACAA
ACAATTAAATCAATTTAAAAATTATAATAATAATAAAGAATAATTTTTAAAAAAAAAAAA
AAAAAAAAACAAAAAAAAAACAAAAAAAAAAAAAAAGTAAAAAAAGTAAAATTATTTATA
AAAATAGATTTCAAAC
Length of full length seq. 676