AFL253
Library AF
(Link to library)
Clone ID AFL253
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID AFL253P
(Link to Original site)
Representative DNA sequence
>AFL253 (AFL253Q) /CSM/AF/AFL2-C/AFL253Q.Seq.d/
AAATTTTTCCATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAA
AGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGA
AATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGA
AGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGA
AATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAAC
TGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGA
TGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGG
TCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATT
GCAXXXXXXXXXXGATTACACGTTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAA
ATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCAC
TCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTG
CATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCA
CACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAAC
TGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAAT
GGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATT
AGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTC
CATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTT
ATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAA
GAAATTATTAAGTTGTGTTATTATTTATTAGAGCTCATTCCAAGTTNATTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
NFSIDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEE
AIQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTD
AWDEGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKAL---

---DYTFEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTICI
TGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVTFKMD
KCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGLL
GPGSNAHGPNEFLDIPFAKKLLSCVIIY*ssfqvx*


Translated Amino Acid sequence (All Frames)
Frame A:
kffh**n*ik*nviky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyrr
snsiiremdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth*
cmg*ritsiqsshqe*qtlwswwcr*wlfnicfnlcnqsia---

---DYTFEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTICI
TGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVTFKMD
KCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGLL
GPGSNAHGPNEFLDIPFAKKLLSCVIIY*ssfqvx*

Frame B:
NFSIDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEE
AIQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTD
AWDEGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKAL---

---itrlkfhniv*iksqnvlkf*akpsmmnshgtkiplqslki*pn**stklgiqlfas
pvlkvfhtlqmlvms*eltpplklvfvyhhhskqlmhqly*kkfsklihhmvlklpskwi
nvlqvgihhkldqn*kkh*eklqifslakttytwvkvvpshs*kcymtvsivnlsllvy*
vqvqmlmvqmns*ifhlprny*vvllfirahskxi

Frame C:
ifplikln*ikch*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqkk
qfny*rngs*hkvskvfhvklkelkd*hqlfsw*skqpklkklklyfymvtwinnhhslm
hgmkdyihtkqssritnsmvvvvqmmviqhllqslqskhc---

---lhv*nsttsfrsnrkmc*nfrrnhl**ilmvqkyhssh*rfnpiddqqnlvsnylhh
rc*rysthfkcw*chenshhr*s*csfttiiqss*cincikrnfrn*stiwc*sylqng*
mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpihenvt*pfqlsiyrywfir
srfkcswsk*ilrysicqeiiklcyyllelipsxl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFL253 (AFL253Q) /CSM/AF/AFL2-C/AFL253Q.Seq.d/ 2058 0.0
SFG389 (SFG389Q) /CSM/SF/SFG3-D/SFG389Q.Seq.d/ 1225 0.0
AFI435 (AFI435Q) /CSM/AF/AFI4-B/AFI435Q.Seq.d/ 1225 0.0
AFB560 (AFB560Q) /CSM/AF/AFB5-C/AFB560Q.Seq.d/ 1221 0.0
VFN247 (VFN247Q) /CSM/VF/VFN2-B/VFN247Q.Seq.d/ 1217 0.0
VFI895 (VFI895Q) /CSM/VF/VFI8-D/VFI895Q.Seq.d/ 1217 0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/ 1217 0.0
SFI811 (SFI811Q) /CSM/SF/SFI8-A/SFI811Q.Seq.d/ 1217 0.0
SFI553 (SFI553Q) /CSM/SF/SFI5-C/SFI553Q.Seq.d/ 1217 0.0
SFG808 (SFG808Q) /CSM/SF/SFG8-A/SFG808Q.Seq.d/ 1217 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of the complete genome. 34 1e-05 15
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 40 0.006 9
AL354810|AL354810.8 Human DNA sequence from clone RP11-527N12 on chromosome 13. 38 0.099 9
AC116446|AC116446.4 Mus musculus chromosome 9 clone RP24-142M20 map 9, WORKING DRAFT SEQUENCE, 5 ordered pieces. 36 0.22 7
BI435853|BI435853.1 EST538614 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCCL22 5' sequence, mRNA sequence. 48 0.31 1
BG591390|BG591390.1 EST499232 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8D17 5' sequence, mRNA sequence. 48 0.31 1
BQ112173|BQ112173.1 EST597749 mixed potato tissues Solanum tuberosum cDNA clone STMCF59 3' end, mRNA sequence. 48 0.31 1
BI435340|BI435340.1 EST538101 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCD08 5' sequence, mRNA sequence. 48 0.31 1
CK276169|CK276169.1 EST722247 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADR82 3' end, mRNA sequence. 48 0.31 1
CK266014|CK266014.1 EST712092 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAC219 3' end, mRNA sequence. 48 0.31 1
dna update 2004. 8.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2... 204 4e-51
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55... 203 1e-50
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 201 5e-50
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi... 200 8e-50
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 200 8e-50
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 199 1e-49
AE016828_97(AE016828|pid:none) Coxiella burnetii RSA 493, comple... 187 4e-46
CP001020_1727(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co... 187 4e-46
CP000733_1810(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 187 4e-46
BX571966_664(BX571966|pid:none) Burkholderia pseudomallei strain... 187 7e-46
protein update 2009. 4.25
PSORT

psg: 0.66 gvh: 0.29 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for AFL253 is cyt

5' end seq. ID AFL253F
5' end seq.
>AFL253F.Seq
AAATTTTTCCATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAA
AGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGA
AATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGA
AGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGA
AATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAAC
TGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGA
TGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGG
TCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATT
GCA----------
Length of 5' end seq. 483
3' end seq. ID AFL253Z
3' end seq.
>AFL253Z.Seq
----------GATTACACGTTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATG
TGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCC
AGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCAT
CACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACAC
CACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGT
ATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGA
TAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGG
AGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCAT
CCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATT
AGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAA
ATTATTAAGTTGTGTTATTATTTATTAGAGCTCATTCCAAGTTNATTAA
Length of 3' end seq. 639
Connected seq. ID AFL253P
Connected seq.
>AFL253P.Seq
AAATTTTTCCATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAA
AGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGA
AATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGA
AGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGA
AATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAAC
TGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGA
TGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGG
TCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATT
GCA----------GATTACACGTTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAA
ATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCAC
TCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTG
CATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCA
CACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAAC
TGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAAT
GGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATT
AGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTC
CATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTT
ATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAA
GAAATTATTAAGTTGTGTTATTATTTATTAGAGCTCATTCCAAGTTNATTAA
Length of connected seq. 1122
Full length Seq ID -
Full length Seq. -
Length of full length seq. -