SSF244
Library SS
(Link to library)
Clone ID SSF244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SSF244 (SSF244Q) /CSM/SS/SSF2-B/SSF244Q.Seq.d/
CGGACGGTGGGGTACAACCAGGCCAAAATCTCTCACAACGTCCAATAAACGGCCAATATG
GCTGGGGACCAGCAGCAGGAAGTGCCGCAAATCCACGTGGNGATCTCCGTGGTTACACTT
ACAATATTAGATAGTTTCGCTGTCTATTTCTGAATATTCAGAAATCTTTGTTTAATGCCA
AAAATAGTAGATATCTATTATATTTTCTCATTTTATAAATCTGATAAGATCTGTCTTAAA
TAAAAAAAATCAAATTTTTTTATAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAXXXXXXXXXX
sequence update 1998.10. 1
Translated Amino Acid sequence
DGGVQPGQNLSQRPINGQYGWGPAAGSAANPRGDLRGYTYNIR*frclflniqkslfnak
nsryllyflil*i**dls*ikkikffyklkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
---


Translated Amino Acid sequence (All Frames)
Frame A:
rtvgynqakishnvq*tanmagdqqqevpqihvxisvvtltildsfavyf*ifrnlclmp
kivdiyyifsfyksdkiclk*kksnffin*kkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
k---


Frame B:
grwgttrpkslttsnkrpiwlgtssrkcrkstwxspwlhlqy*ivslsiseyseifv*cq
k**isiifshfinlirsvlnkknqifl*ikkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
k---


Frame C:
DGGVQPGQNLSQRPINGQYGWGPAAGSAANPRGDLRGYTYNIR*frclflniqkslfnak
nsryllyflil*i**dls*ikkikffyklkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSF244 (SSF244Q) /CSM/SS/SSF2-B/SSF244Q.Seq.d/ 478 e-134
SLA791 (SLA791Q) /CSM/SL/SLA7-D/SLA791Q.Seq.d/ 458 e-128
VSJ625 (VSJ625Q) /CSM/VS/VSJ6-B/VSJ625Q.Seq.d/ 456 e-127
VSE623 (VSE623Q) /CSM/VS/VSE6-A/VSE623Q.Seq.d/ 456 e-127
VSC716 (VSC716Q) /CSM/VS/VSC7-A/VSC716Q.Seq.d/ 456 e-127
VSB885 (VSB885Q) /CSM/VS/VSB8-D/VSB885Q.Seq.d/ 456 e-127
VSA888 (VSA888Q) /CSM/VS/VSA8-D/VSA888Q.Seq.d/ 456 e-127
VSA180 (VSA180Q) /CSM/VS/VSA1-D/VSA180Q.Seq.d/ 456 e-127
VHN329 (VHN329Q) /CSM/VH/VHN3-B/VHN329Q.Seq.d/ 456 e-127
VHM579 (VHM579Q) /CSM/VH/VHM5-D/VHM579Q.Seq.d/ 456 e-127

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 450 e-128 2
AC115608|AC115608.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence. 450 e-128 2
AC121604|AC121604.2 Mus musculus chromosome UNK clone RP23-312E2, WORKING DRAFT SEQUENCE, 3 unordered pieces. 50 0.022 1
AC140217|AC140217.1 Mus musculus chromosome UNK clone RP23-279O5, WORKING DRAFT SEQUENCE, 14 unordered pieces. 50 0.022 1
AC025299|AC025299.1 Homo sapiens clone RP11-21P5, LOW-PASS SEQUENCE SAMPLING. 38 0.13 3
AC108886|AC108886.2 Rattus norvegicus clone RP31-392N9 strain Brown Norway, WORKING DRAFT SEQUENCE, 2 ordered pieces. 44 0.27 2
AQ112874|AQ112874.1 CIT-HSP-2376G2.TR CIT-HSP Homo sapiens genomic clone 2376G2, DNA sequence. 46 0.35 1
AC011344|AC011344.6 Homo sapiens chromosome 5 clone CTC-287O14, WORKING DRAFT SEQUENCE, 3 ordered pieces. 46 0.35 1
AC008442|AC008442.6 Homo sapiens chromosome 5 clone CTC-331P4, complete sequence. 46 0.35 1
AC129135|AC129135.4 Rattus norvegicus clone CH230-23C19, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 0.39 2
dna update 2004. 2. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116957_51(AC116957|pid:none) Dictyostelium discoideum chromoso... 91 2e-17
AE017345_412(AE017345|pid:none) Cryptococcus neoformans var. neo... 33 3.0

protein update 2009. 1.29
PSORT

psg: 0.75 gvh: 0.35 alm: 0.66 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: cytoskeletal
12.0 %: mitochondrial

>> prediction for SSF244 is cyt

5' end seq. ID SSF244F
5' end seq.
>SSF244F.Seq
CGGACGGTGGGGTACAACCAGGCCAAAATCTCTCACAACGTCCAATAAACGGCCAATATG
GCTGGGGACCAGCAGCAGGAAGTGCCGCAAATCCACGTGGNGATCTCCGTGGTTACACTT
ACAATATTAGATAGTTTCGCTGTCTATTTCTGAATATTCAGAAATCTTTGTTTAATGCCA
AAAATAGTAGATATCTATTATATTTTCTCATTTTATAAATCTGATAAGATCTGTCTTAAA
TAAAAAAAATCAAATTTTTTTATAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
Length of 5' end seq. 365
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -