>SSF228 (SSF228Q) /CSM/SS/SSF2-B/SSF228Q.Seq.d/
XXXXXXXXXXCGCTGATGTTGTTCTCCTTTGTTTCAGCACAATCAGTCAATCATCATATG
AAGCCATTAGAGATAAATGGGCACCAGAAGTTAATCACTATATCCCAGATGTACCATCAA
TTTTAGTTGGTACTAAAATCGATTTACGTGAACAACAACACCCAGATCCAAACTCTGGTA
AATTCGAACCAATCACTGCCGATATGGGTATTTCAATGCAAAAACAAATTAAAGCCAAGA
AATATTTAGAAGTCTCTGCAAAGACTCGTCAAGGTTTAGAAGAAGTTTTCAGTGCTGCCA
TTGAAATCGTTCTTGAATCAAGAGGTATGGATAAAAAGAGTCAAGATGGTTCTTCAAGTG
CATCTGGTGTTCCATCAGGTGATAAACCAACAAAAGGAAAAGCAGGTAAAAAGAAATCTG
GTTGTATTATACTTTAAATTATAGGAATAAAAATAAAAATAAAAATAATAATAATAATAA
TAAAAAAAA

---ADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGK
FEPITADMGISMQKQIKAKKYLEVSAKTRQGLEEVFSAAIEIVLESRGMDKKSQDGSSSA
SGVPSGDKPTKGKAGKKKSGCIIL*iigikikikiiiiiikk

Frame A:
---ADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGK
FEPITADMGISMQKQIKAKKYLEVSAKTRQGLEEVFSAAIEIVLESRGMDKKSQDGSSSA
SGVPSGDKPTKGKAGKKKSGCIIL*iigikikikiiiiiikk


Frame B:
---lmlfsfvsaqsvnhhmkpleinghqklitisqmyhqf*lvlksiyvnnntqiqtlvn
snqslpiwvfqcknklkprni*kslqrlvkv*kkfsvlplksflnqevwikrvkmvlqvh
lvfhqvinqqkekqvkrnlvvlyfkl*e*k*k*k******kk


Frame C:
---*ccsplfqhnqsiii*sh*r*mgtrs*slyprctinfswy*nrft*tttprsklw*i
rtnhcrygyfnaktn*sqeifrslckdssrfrrsfqcch*nrs*ikryg*kesrwffkci
wcsir**tnkrksr*keiwlyytlnyrnknknknnnnnnkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA320 (VSA320Q) /CSM/VS/VSA3-A/VSA320Q.Seq.d/                        862   0.0
SSM513 (SSM513Q) /CSM/SS/SSM5-A/SSM513Q.Seq.d/                        862   0.0
SSI693 (SSI693Q) /CSM/SS/SSI6-D/SSI693Q.Seq.d/                        862   0.0
SSG623 (SSG623Q) /CSM/SS/SSG6-A/SSG623Q.Seq.d/                        862   0.0
SSF228 (SSF228Q) /CSM/SS/SSF2-B/SSF228Q.Seq.d/                        862   0.0
SSE776 (SSE776Q) /CSM/SS/SSE7-D/SSE776Q.Seq.d/                        862   0.0
SSE332 (SSE332Q) /CSM/SS/SSE3-B/SSE332Q.Seq.d/                        862   0.0
SSD442 (SSD442Q) /CSM/SS/SSD4-B/SSD442Q.Seq.d/                        862   0.0
SSK281 (SSK281Q) /CSM/SS/SSK2-D/SSK281Q.Seq.d/                        839   0.0
SSC347 (SSC347Q) /CSM/SS/SSC3-B/SSC347Q.Seq.d/                        839   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U41222|U41222.1 Dictyostelium discoideum RacE (racE) gene, complete cds.   730   0.0    2
AF310890|AF310890.1 Dictyostelium discoideum PcmA (pcmA) and RacE (racE) genes, complete cds; tRNA-Phe gene, complete sequence; and unknown gene.   730   0.0    2
AC091523|AC091523.23 Mus musculus chromosome 1 clone rp23-77a8 strain C57BL/6J, complete sequence.    48   0.12   1
AC016415|AC016415.5 Homo sapiens chromosome 14 clone RP11-10I10 map 14, WORKING DRAFT SEQUENCE, 4 unordered pieces.    34   0.64   8
AC026138|AC026138.3 Homo sapiens chromosome 1 clone RP11-269I13 map 1, *** SEQUENCING IN PROGRESS ***, 49 unordered pieces.    36   1.1    4
AC115660|AC115660.4 Rattus norvegicus clone CH230-363E11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42   1.1    4
AC016748|AC016748.3 Homo sapiens BAC clone RP11-494M7 from 2, complete sequence.    38   1.2    4
AC083813|AC083813.29 Homo sapiens 12q BAC RP11-304C10 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38   1.8    4
AC095633|AC095633.6 Rattus norvegicus clone CH230-8J9, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   1.8    1
AC022536|AC022536.13 Homo sapiens chromosome 10 clone RP11-38M7, complete sequence.    44   1.8    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23862) RecName: Full=Rho-related protein racE; Flags: Precurso...   241   6e-63
CS026603_1(CS026603|pid:none) Sequence 155 from Patent WO2005014...   138   8e-32
FJ618515_1(FJ618515|pid:none) Eriobotrya japonica ROP2 mRNA, par...   104   9e-22
EF529818_1(EF529818|pid:none) Musa acuminata rop (rop1) mRNA, co...   103   2e-21
AF115476_1(AF115476|pid:none) Physcomitrella patens rac-like GTP...   102   4e-21
GN080105_1(GN080105|pid:none) Sequence 708 from Patent WO2009027...   102   5e-21
AF233446_1(AF233446|pid:none) Physcomitrella patens rac 1 protei...   102   5e-21
EF144250_1(EF144250|pid:none) Populus trichocarpa clone PX0011_N...   102   5e-21
(Q6Z808) RecName: Full=Rac-like GTP-binding protein 3; AltName: ...   102   6e-21
AY282417_1(AY282417|pid:none) Aplysia californica Rac mRNA, comp...   101   8e-21

 psg: 0.75  gvh: 0.67  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 20.0 %: plasma membrane
	 12.0 %: vesicles of secretory system
	 12.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal

>> prediction for SSF228 is cyt

>SSF228Z.Seq
----------CGCTGATGTTGTTCTCCTTTGTTTCAGCACAATCAGTCAATCATCATATG
AAGCCATTAGAGATAAATGGGCACCAGAAGTTAATCACTATATCCCAGATGTACCATCAA
TTTTAGTTGGTACTAAAATCGATTTACGTGAACAACAACACCCAGATCCAAACTCTGGTA
AATTCGAACCAATCACTGCCGATATGGGTATTTCAATGCAAAAACAAATTAAAGCCAAGA
AATATTTAGAAGTCTCTGCAAAGACTCGTCAAGGTTTAGAAGAAGTTTTCAGTGCTGCCA
TTGAAATCGTTCTTGAATCAAGAGGTATGGATAAAAAGAGTCAAGATGGTTCTTCAAGTG
CATCTGGTGTTCCATCAGGTGATAAACCAACAAAAGGAAAAGCAGGTAAAAAGAAATCTG
GTTGTATTATACTTTAAATTATAGGAATAAAAATAAAAATAAAAATAATAATAATAATAA
TAAAAAAAA