SSF219 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSF219
Library	SS (Link to library)
Clone ID	SSF219 (Link to dictyBase)
Atlas ID	-
NBRP ID	G00728
dictyBase ID	DDB0188430
Link to Contig	Contig-U05091-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSF2-A/SSF219Q.Seq.d/
Representative seq. ID	SSF219E (Link to Original site)
Representative DNA sequence	>SSF219 (SSF219Q) /CSM/SS/SSF2-A/SSF219Q.Seq.d/ AGAAAATAAAAATAAATAAATAAACTAAAGAAAACTAATAAAAAAAAAAACAAAATGAAT TATTATTATAAAATTTTAATATTTTTATTATTTTTAATTGTTTTAAATAGTATTACAATC GTAAAATCAAATTTATTAGGTGATATAAATTACAACGCATCAGCTGATTATTTGGAATTT TGATGAAATAGATAAACTATTATTGGGAGGGTCACATAATGATACTTCAAAAAAAATCAT TTGGAAAGGTTATTTGTATCTTTCATAATTTAAAGAATCAAACCGAACTTTCAGTTGAAT TTAAATTAAATAATAAATTAGTATACATTTATCAAAGAAATCTTTTGAAGGCTGATAATG GAGATTCAAATGGCGCATATGTAACAATGGATGATAATGATCAAAAAATTTTACTTGCAA TTTTTAATGAATTAAAATCACCNAANCCAACACCGACCAATCAAATAAGGGTCAATACAA AAGATTCTTATTTTACTGCTCACTTCATTGGTGATATTAATAGTGAATTATTTAAAAANA TTGATAAAGTTATAACTTGGAATCCAATAACAACAAAAGTAAAAGAATGTGATTCTCTTC AAAAATTATTTATTAAATATTCAAAAAANATTTAATGTGTATAGTGTATAAAAAATAAAT AAATAAATGTGTTTTTTTAGGTGAA
sequence update	1999. 4. 6
Translated Amino Acid sequence	kikinktkenkkkqnelllnfnifiifncfkyynrkikfiryklqrislfgil mkINYYWEGHIMILQKKSFGKVICIFHNLKNQTELSVEFKLNNKLVYIYQRNLLKADNG DSNGAYVTMDDNDQKILLAIFNELKSPXPTPTNQIRVNTKDSYFTAHFIGDINSELFKXI DKVITWNPITTKVKECDSLQKLFIKYSKXIcvciknkinvffv
Translated Amino Acid sequence (All Frames)	Frame A: rkkinklkktnkkknkmnyyykilifllflivlnsitivksnllgdinynasadylef *nrtiigrvt*yfkknhlerlfvsfiirikpnfqlnlniinytfikeifrlim eiqmahmqwmimikkfylqflmnnhxxqhrpikgsiqkilillltslvilivnylkx likllgiqqqkknvilfknyllniqkxfnvysvkinkmcffr Frame B: enknkinrklikkktkiiiikfyfyyflfivlqsnqiyviitthqliiwnf deidklllggshndtskkiiwkgylylsfkesnrtfsiikisihlskksfegw rfkwricnng*sknftcnfikitxxntdqsnkgqykrflfycslhwy*iikx *synlesnnnkskrmfsskiiyifkkxlmcivykkinkcvflge Frame C: kikinktkenkkkqnelllnfnifiifncfkyynrkikfiryklqrislfgil mkINYYWEGHIMILQKKSFGKVICIFHNLKNQTELSVEFKLNNKLVYIYQRNLLKADNG DSNGAYVTMDDNDQKILLAIFNELKSPXPTPTNQIRVNTKDSYFTAHFIGDINSELFKXI DKVITWNPITTKVKECDSLQKLFIKYSKXIcvciknkinvffv
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSF219 (SSF219Q) /CSM/SS/SSF2-A/SSF219Q.Seq.d/ 1009 0.0 SSJ737 (SSJ737Q) /CSM/SS/SSJ7-B/SSJ737Q.Seq.d/ 44 0.003 SSJ265 (SSJ265Q) /CSM/SS/SSJ2-C/SSJ265Q.Seq.d/ 44 0.003 SSE872 (SSE872Q) /CSM/SS/SSE8-C/SSE872Q.Seq.d/ 44 0.003 SSD305 (SSD305Q) /CSM/SS/SSD3-A/SSD305Q.Seq.d/ 44 0.003 FC-AB05 (FC-AB05Q) /CSM/FC/FC-AB/FC-AB05Q.Seq.d/ 44 0.003 VSE266 (VSE266Q) /CSM/VS/VSE2-C/VSE266Q.Seq.d/ 42 0.011 VHO815 (VHO815Q) /CSM/VH/VHO8-A/VHO815Q.Seq.d/ 42 0.011 VHJ739 (VHJ739Q) /CSM/VH/VHJ7-B/VHJ739Q.Seq.d/ 42 0.011 VHJ184 (VHJ184Q) /CSM/VH/VHJ1-D/VHJ184Q.Seq.d/ 42 0.011
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC114263\|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 40 1e-06 6 AC005308\|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, * SEQUENCING IN PROGRESS *, 1 ordered pieces. 42 1e-05 9 AC115604\|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 46 1e-04 5 AL671321\|AL671321.16 Mouse DNA sequence from clone RP23-274I19 on chromosome X. 40 1e-04 7 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 2e-04 5 AL162373\|AL162373.16 Human DNA sequence from clone RP11-272M24 on chromosome 13. 46 2e-04 2 AC116979\|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 34 2e-04 8 AP001700\|AP001700.1 Homo sapiens genomic DNA, chromosome 21q, section 44/105. 46 0.001 2 AL929352\|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 42 0.002 7 AC116920\|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 36 0.002 8
dna update	2003. 8.30
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000885_504(CP000885\|pid:none) Clostridium phytofermentans ISDg... 33 6.1
protein update	2009. 3. 5
PSORT	psg: 0.75 gvh: 0.32 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: cytoplasmic 32.0 %: nuclear 24.0 %: cytoskeletal 4.0 %: mitochondrial >> prediction for SSF219 is cyt
5' end seq. ID	SSF219F
5' end seq.	>SSF219F.Seq AGAAAATAAAAATAAATAAATAAACTAAAGAAAACTAATAAAAAAAAAAACAAAATGAAT TATTATTATAAAATTTTAATATTTTTATTATTTTTAATTGTTTTAAATAGTATTACAATC GTAAAATCAAATTTATTAGGTGATATAAATTACAACGCATCAGCTGATGTTATTTGGAAT TTTGATGAAATAGATAAACTATTATTGGGAGGGTCACATAATGATACTTCAAAAAAAATC ATTTGGAAAGGTTATTTGTATCTTTCATAATTTAAAGAATCAAACCGAACTTTCAGTTGA ATTTAAATTAAATAATAAATTAGTATACATTTATCAAAGAAATCTTTTGAAGGCTGATAA TGGAGATTCAAATGGCGCATATGTAACAATGGATGATAATGATCAAAAAATTTTACTTGC AATTTTTAATGAATTAAAATCACCAAAACCAACACCGACCAATCAAATAAGGGTCAATAC AAAAGATTCTTATTTTACTGCTCACTTCATTGGTGATATTAATAGTGAATTATTTAAAAA CATTGATAAAGTTATAACTTGGAATCCAATAACAACAAAAGTAAAAGAATGTGATTCTCT TCAAAAATTATTTATTAAATATTCAAAAAACATTTAATGTGTATA----------
Length of 5' end seq.	645
3' end seq. ID	SSF219Z
3' end seq.	>SSF219Z.Seq ----------TATTTGGAATTTTGATGAAATAGATAAACTATTATTGGGAGGGTCACATA ATGATACTTCAAAAAAAATCATTTGGAAAGGTTATTTGTATCTTTCATAATTTAAAGAAT CAAACCGAACTTTCAGTTGAATTTAAATTAAATAATAAATTAGTATACATTTATCAAAGA AATCTTTTGAAGGCTGATAATGGAGATTCAAATGGCGCATATGTAACAATGGATGATAAT GATCAAAAAATTTTACTTGCAATTTTTAATGAATTAAAATCACCCAACCCAACACCGACC AATCAAATAAGGGTCAATACAAAAGATTCTTATTTTACTGCTCACTTCATTGGTGATATT AATAGTGAATTATTTAAAAAAATTGATAAAGTTATAACTTGGAATCCAATAACAACAAAA GTAAAAGAATGTGATTCTCTTCAAAAATTATTTATTAAATATTCAAAAAAAATTTAATGT GTATAAAAAATAAATAAATAAATGTGTTTTTTTAGGTGAAAAATAAAA
Length of 3' end seq.	518
Connected seq. ID	SSF219P
Connected seq.	>SSF219P.Seq AGAAAATAAAAATAAATAAATAAACTAAAGAAAACTAATAAAAAAAAAAACAAAATGAAT TATTATTATAAAATTTTAATATTTTTATTATTTTTAATTGTTTTAAATAGTATTACAATC GTAAAATCAAATTTATTAGGTGATATAAATTACAACGCATCAGCTGATGTTATTTGGAAT TTTGATGAAATAGATAAACTATTATTGGGAGGGTCACATAATGATACTTCAAAAAAAATC ATTTGGAAAGGTTATTTGTATCTTTCATAATTTAAAGAATCAAACCGAACTTTCAGTTGA ATTTAAATTAAATAATAAATTAGTATACATTTATCAAAGAAATCTTTTGAAGGCTGATAA TGGAGATTCAAATGGCGCATATGTAACAATGGATGATAATGATCAAAAAATTTTACTTGC AATTTTTAATGAATTAAAATCACCAAAACCAACACCGACCAATCAAATAAGGGTCAATAC AAAAGATTCTTATTTTACTGCTCACTTCATTGGTGATATTAATAGTGAATTATTTAAAAA CATTGATAAAGTTATAACTTGGAATCCAATAACAACAAAAGTAAAAGAATGTGATTCTCT TCAAAAATTATTTATTAAATATTCAAAAAACATTTAATGTGTATA----------TATTT GGAATTTTGATGAAATAGATAAACTATTATTGGGAGGGTCACATAATGATACTTCAAAAA AAATCATTTGGAAAGGTTATTTGTATCTTTCATAATTTAAAGAATCAAACCGAACTTTCA GTTGAATTTAAATTAAATAATAAATTAGTATACATTTATCAAAGAAATCTTTTGAAGGCT GATAATGGAGATTCAAATGGCGCATATGTAACAATGGATGATAATGATCAAAAAATTTTA CTTGCAATTTTTAATGAATTAAAATCACCCAACCCAACACCGACCAATCAAATAAGGGTC AATACAAAAGATTCTTATTTTACTGCTCACTTCATTGGTGATATTAATAGTGAATTATTT AAAAAAATTGATAAAGTTATAACTTGGAATCCAATAACAACAAAAGTAAAAGAATGTGAT TCTCTTCAAAAATTATTTATTAAATATTCAAAAAAAATTTAATGTGTATAAAAAATAAAT AAATAAATGTGTTTTTTTAGGTGAAAAATAAAA
Length of connected seq.	1163
Full length Seq ID	SSF219E
Full length Seq.	>SSF219E.Seq AGAAAATAAAAATAAATAAATAAACTAAAGAAAACTAATAAAAAAAAAAACAAAATGAAT TATTATTATAAAATTTTAATATTTTTATTATTTTTAATTGTTTTAAATAGTATTACAATC GTAAAATCAAATTTATTAGGTGATATAAATTACAACGCATCAGCTGATTATTTGGAATTT TGATGAAATAGATAAACTATTATTGGGAGGGTCACATAATGATACTTCAAAAAAAATCAT TTGGAAAGGTTATTTGTATCTTTCATAATTTAAAGAATCAAACCGAACTTTCAGTTGAAT TTAAATTAAATAATAAATTAGTATACATTTATCAAAGAAATCTTTTGAAGGCTGATAATG GAGATTCAAATGGCGCATATGTAACAATGGATGATAATGATCAAAAAATTTTACTTGCAA TTTTTAATGAATTAAAATCACCNAANCCAACACCGACCAATCAAATAAGGGTCAATACAA AAGATTCTTATTTTACTGCTCACTTCATTGGTGATATTAATAGTGAATTATTTAAAAANA TTGATAAAGTTATAACTTGGAATCCAATAACAACAAAAGTAAAAGAATGTGATTCTCTTC AAAAATTATTTATTAAATATTCAAAAAANATTTAATGTGTATAGTGTATAAAAAATAAAT AAATAAATGTGTTTTTTTAGGTGAA
Length of full length seq.	685

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas