>SSF195 (SSF195Q) /CSM/SS/SSF1-D/SSF195Q.Seq.d/
XXXXXXXXXXGATTCAGCAGTTGGAAAAACATCGTTATTATTAAGATTTACAGATCCCAA
TAATTTTCAAGAGACTTCAGTAAATATGACTAGTGTTGATTATAAAAATAAAAATATAAC
TATTGATGGAAGAACATTTAATTTACAAATTTGGGATACAGCAGGACAAGAGAGATTCAG
AACAATTACATCATCTTTTTATAGAGGAGCACATGGTGTTTTAGTATGTTATGATGTCAC
TGATCAACTTACATATAATAACGTTGGGTTATGGATGCAAGAAATTCAAAGATATGGAGT
ACTTGGAGTTAGTAGAGTTTTAGTTGGAAACAAATGTGATCTCGAAGATAGAAAATTGGT
TAACGCTTCAATTGCCCAAGAATACGCTGATATTCTCGGTATTCCATTCATTGAAACTTC
TGCTACAACTGGTGTTAATGTAGAAGAGGCTTTCATGGCAATGGCAGATGAAATTTATAG
AAATCATATAGGTGGCTCAAAACCTTCTGTTGTAAAACCAGTATGTGGAAGTCCTCCCCG
CACGAAAAAAAATATTTGCTAATTTTAAAGAAGAGTGGATAGAAGAAGGAGGGTTTTTGC
CAATTATTTTAAAGTTTCATATAATTGCAACATCAAAAAATAAATAAAAAAATATAAAAT
GTAAAATTTAAATGAA

---SAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRT
ITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVN
ASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIYRNHIGGSKPSVVKPVCGSPPRT
KKNIC*f*rrvdrrrrvfanyfkvsyncnikk*ikkykm*nlne

Frame A:
---iqqlekhryy*dlqipiifkrlq*i*lvliikiki*llmeehliykfgiqqdkrdse
qlhhlfieehmvf*yvmmslinlhiitlgygckkfkdmeylelvef*letnviskienwl
tlqlpkntlifsvfhslklllqlvlm*krlswqwqmkfieii*vaqnlll*nqyvevlpa
rkkifanfkeewieeggflpiilkfhiiatsknk*knikcki*m


Frame B:
---fsswkniviikiyrsq*fsrdfskyd*c*l*k*kyny*wkni*ftnlgysrtreiqn
nyiifl*rstwcfsml*ch*styi**rwvmdarnskiwstws**sfswkqm*srr*kig*
rfncprir*ysrysih*nfcynwc*crrgfhgngr*nl*ksyrwlktfccktsmwkssph
ekkyllilkksg*kkegfcqlf*sfi*lqhqkinkki*nvkfk*


Frame C:
---SAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRT
ITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVN
ASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIYRNHIGGSKPSVVKPVCGSPPRT
KKNIC*f*rrvdrrrrvfanyfkvsyncnikk*ikkykm*nlne

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF195 (SSF195Q) /CSM/SS/SSF1-D/SSF195Q.Seq.d/                       1189   0.0
SSG849 (SSG849Q) /CSM/SS/SSG8-C/SSG849Q.Seq.d/                       1128   0.0
SSH468 (SSH468Q) /CSM/SS/SSH4-C/SSH468Q.Seq.d/                        684   0.0
SSF791 (SSF791Q) /CSM/SS/SSF7-D/SSF791Q.Seq.d/                        684   0.0
SSC869 (SSC869Q) /CSM/SS/SSC8-C/SSC869Q.Seq.d/                        684   0.0
VSD412 (VSD412Q) /CSM/VS/VSD4-A/VSD412Q.Seq.d/                        571   e-162
VSD572 (VSD572Q) /CSM/VS/VSD5-C/VSD572Q.Seq.d/                        525   e-148
SSA153 (SSA153Q) /CSM/SS/SSA1-C/SSA153Q.Seq.d/                        519   e-146
VFJ330 (VFJ330Q) /CSM/VF/VFJ3-B/VFJ330Q.Seq.d/                        496   e-139
SSD504 (SSD504Q) /CSM/SS/SSD5-A/SSD504Q.Seq.d/                        466   e-130

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L21010|L21010.1 Dictyostelium discoideum Rab1B mRNA, 3' end of cds.    52   5e-22  4
L21009|L21009.1 Dictyostelium discoideum Rab1A mRNA, complete cds.    84   4e-15  2
AB054578|AB054578.1 Entamoeba histolytica EhRab1 mRNA for small GTPase Rab1, complete cds.    68   1e-11  2
CF479278|CF479278.1 RTWW3_23_A07.b1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_23_A07_A022 3', mRNA sequence.    58   3e-08  2
CF392527|CF392527.1 RTDR3_6_A12.g1_A022 Loblolly pine roots recovering from drought DR3 Pinus taeda cDNA clone RTDR3_6_A12_A022 5', mRNA sequence.    58   3e-08  2
BX677852|BX677852.1 Pinus pinaster root EST, clone RN45E11.        58   4e-08  2
BQ655324|BQ655324.1 NXRV092_H08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV092_H08 5', mRNA sequence.    58   4e-08  2
BX251926|BX251926.1 Pinus pinaster xylem EST, clone PP057C10.      58   4e-08  2
CK442575|CK442575.1 GQ0013d.TB.1_D08 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0013d_D08 3', mRNA sequence.    58   4e-08  2
CF477069|CF477069.1 RTWW3_5_D10.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_5_D10_A022 5', mRNA sequence.    58   4e-08  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E92) RecName: Full=Ras-related protein RabG1;                     373   e-102
(P34140) RecName: Full=Ras-related protein Rab-1B;                    203   3e-51
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ...   195   9e-49
BT057068_1(BT057068|pid:none) Salmo salar clone ssal-eve-570-039...   195   9e-49
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related...   195   9e-49
L21010_1(L21010|pid:none) Dictyostelium discoideum Rab1B mRNA, 3...   195   1e-48
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342...   194   2e-48
(Q05974) RecName: Full=Ras-related protein Rab-1A;  &S38339(S383...   193   3e-48
AL606522_3(AL606522|pid:none) Mouse DNA sequence from clone RP23...   192   6e-48
DQ214474_1(DQ214474|pid:none) Taeniopygia guttata clone 0063P003...   192   6e-48

 psg: 0.60  gvh: 0.41  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.10  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSF195 is cyt

>SSF195Z.Seq
----------GATTCAGCAGTTGGAAAAACATCGTTATTATTAAGATTTACAGATCCCAA
TAATTTTCAAGAGACTTCAGTAAATATGACTAGTGTTGATTATAAAAATAAAAATATAAC
TATTGATGGAAGAACATTTAATTTACAAATTTGGGATACAGCAGGACAAGAGAGATTCAG
AACAATTACATCATCTTTTTATAGAGGAGCACATGGTGTTTTAGTATGTTATGATGTCAC
TGATCAACTTACATATAATAACGTTGGGTTATGGATGCAAGAAATTCAAAGATATGGAGT
ACTTGGAGTTAGTAGAGTTTTAGTTGGAAACAAATGTGATCTCGAAGATAGAAAATTGGT
TAACGCTTCAATTGCCCAAGAATACGCTGATATTCTCGGTATTCCATTCATTGAAACTTC
TGCTACAACTGGTGTTAATGTAGAAGAGGCTTTCATGGCAATGGCAGATGAAATTTATAG
AAATCATATAGGTGGCTCAAAACCTTCTGTTGTAAAACCAGTATGTGGAAGTCCTCCCCG
CACGAAAAAAAATATTTGCTAATTTTAAAGAAGAGTGGATAGAAGAAGGAGGGTTTTTGC
CAATTATTTTAAAGTTTCATATAATTGCAACATCAAAAAATAAATAAAAAAATATAAAAT
GTAAAATTTAAATGAA