AFL243
Library AF
(Link to library)
Clone ID AFL243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15648-1
Original site URL
Representative seq. ID AFL243P
(Link to Original site)
Representative DNA sequence
>AFL243 (AFL243Q) /CSM/AF/AFL2-B/AFL243Q.Seq.d/
TTNAAATATGCAAGTTTAAATACAACTAGTGATGCAATTACAAGATTAAAATCTGTAGCA
CATTTACATAAAGGTCATGTTATTGGTATTGCACATACAAGATGGGCAACTCATGGTGGT
AAAACTGATAAAAATGCACATCCACATCTTGATTATAAAGATAGAGTTGCAGTTATTCAT
AATGGTGTAATTGAAAATAATATTATATTAAAAGAAGAACTTGAAAAGAAAGGTATTGTT
TTTAGATCAGAAACTGATACTGAAGTTATTGCACAATTAATTGGTTTATTTTTAGATCAA
GGATTACAAATTGTTGATGCAATTAAAGAAACACAAAAGAAATTACAAGGTACATGGGGT
ATTGCAGTAGTTTGTAAGGATAATCCTGATCAAATTGTAGCAGCAAGAAATGGTAGTCCA
TTATTAATTGGTATTGGAAAGGATCGTATGTTTATTGCAAGTGAACCAGGTGCATTTTCA
AGACATACCAAAGAGTTTATTTCAATGGAAAATGGTGAGATTGCAGTATTGAAAGCTGAT
GGACATTCATTGGATTTAAGTAGAATTGAAATGGCAGCACATGAAXXXXXXXXXXTCTCA
ATTGTAAATGCCGTTGGTTCATTGATTGCAAGAAGTTCAATTTGTAGTGTCTATTTAAAT
GCAGGTCGTGAACATGCTGTAGCTTCAACCAAAGCATTCTCATCACAAGTTACAGTATTA
TCATTGGTTGCAAATTGGTTCGCTCAACATAGAGGCATCGAAGAGGGTAAAAGACGTCAG
GTTAATCGATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGCATTACGTGTTCGTGA
ACAATGTAAAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAATCTTTGTTTTGGGTAA
AGGTTTCGCTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAAAGAAATCACCTATTG
TCATGCTGAAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATTCGCTCTCATTGAACA
AGATACACCAATTATCTTGATCATTTTAGATGATAGTAATTCTCCATTAATGAGAGTCGC
CGCTGAAGAAGTAAAAGCAAGAGGTGCTCATACTATCGTCATTACAAATAATTCAACTTT
GGCTAAACATATCGCTCATGATACCATTTTAATTCCAAGTAATGGTATTTTAACTGCACT
TTTAGCTGCAATTCCATTACAATTATAGCTTANAAAGGCAATTGTAAAAATATGACCCAG
ACGTCCAAAAAATTAGCCAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
XKYASLNTTSDAITRLKSVAHLHKGHVIGIAHTRWATHGGKTDKNAHPHLDYKDRVAVIH
NGVIENNIILKEELEKKGIVFRSETDTEVIAQLIGLFLDQGLQIVDAIKETQKKLQGTWG
IAVVCKDNPDQIVAARNGSPLLIGIGKDRMFIASEPGAFSRHTKEFISMENGEIAVLKAD
GHSLDLSRIEMAAHE---

---SIVNAVGSLIARSSICSVYLNAGREHAVASTKAFSSQVTVLSLVANWFAQHRGIEEG
KRRQVNRFSSSFTNKFGYGITCS*tm*snrsknl*kefnlcfg*rfr*tnri*rcfen*r
nhllsc*rl*wwcs*twsirsh*trytnyldhfr***fsinesrr*rskskrcsyyrhyk
*fnfg*tyrs*yhfnsk*wyfnctfscnsitiiaxkgncknmtqtskklak


Translated Amino Acid sequence (All Frames)
Frame A:
XKYASLNTTSDAITRLKSVAHLHKGHVIGIAHTRWATHGGKTDKNAHPHLDYKDRVAVIH
NGVIENNIILKEELEKKGIVFRSETDTEVIAQLIGLFLDQGLQIVDAIKETQKKLQGTWG
IAVVCKDNPDQIVAARNGSPLLIGIGKDRMFIASEPGAFSRHTKEFISMENGEIAVLKAD
GHSLDLSRIEMAAHE---

---sql*mplvh*lqevqfvvsi*mqvvnml*lqpkhshhklqyyhwlqigslnieaskr
vkdvrlidslhrlptnlgmalrvreqckaiaqkiykknsifvlgkgfaepiafegalkik
eitychaegysggalkhgpfalieqdtpiiliilddsnsplmrvaaeevkargahtivit
nnstlakhiahdtilipsngiltallaaiplql*lxkaivki*prrpkn*pk

Frame B:
xnmqv*iqlvmqlqd*nl*hiyikvmllvlhiqdgqlmvvklikmhihiliikielqlfi
mv*lkiily*kknlkrkvlfldqklilkllhn*lvyf*ikdykllmqlkkhkrnykvhgv
lq*fvriilikl*qqemvvhy*lvlerivcllqvnqvhfqdipkslfqwkmvrlqy*klm
dihwi*velkwqhm---

---lnckcrwfidckkfnl*clfkcrs*tccsfnqsilitsysiiigcklvrst*rhrrg
*ktsg*silfivyqqiwvwhyvfvnnvkqslkkfikriqslfwvkvslnqshlkvl*klk
kspivmlkvivvvllnmvhslslnkihqls*sf*mivilh**esplkk*kqevlilsslq
iiqlwlnislmipf*fqvmvf*lhf*lqfhynyslxrql*kydpdvqkisqn

Frame C:
xickfkyn**cnykikicstft*rscywyctykmgnsww*n**kctsts*l*r*scsys*
wcn*k*yyikrrt*kerycf*irn*y*syctinwfifrsritnc*cn*rntkeitrymgy
cssl*g*s*sncsskkw*siinwywkgsyvyck*trcifktyqrvyfngkw*dcsies*w
tfigfk*n*ngst*---

---SIVNAVGSLIARSSICSVYLNAGREHAVASTKAFSSQVTVLSLVANWFAQHRGIEEG
KRRQVNRFSSSFTNKFGYGITCS*tm*snrsknl*kefnlcfg*rfr*tnri*rcfen*r
nhllsc*rl*wwcs*twsirsh*trytnyldhfr***fsinesrr*rskskrcsyyrhyk
*fnfg*tyrs*yhfnsk*wyfnctfscnsitiiaxkgncknmtqtskklak

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFL243 (AFL243Q) /CSM/AF/AFL2-B/AFL243Q.Seq.d/ 2472 0.0
CFC248 (CFC248Q) /CSM/CF/CFC2-B/CFC248Q.Seq.d/ 1287 0.0
AFK592 (AFK592Q) /CSM/AF/AFK5-D/AFK592Q.Seq.d/ 1285 0.0
SFE659 (SFE659Q) /CSM/SF/SFE6-C/SFE659Q.Seq.d/ 1279 0.0
CFI829 (CFI829Q) /CSM/CF/CFI8-B/CFI829Q.Seq.d/ 1259 0.0
AFM651 (AFM651Q) /CSM/AF/AFM6-C/AFM651Q.Seq.d/ 1245 0.0
SSD124 (SSD124Q) /CSM/SS/SSD1-A/SSD124Q.Seq.d/ 1229 0.0
AFO350 (AFO350Q) /CSM/AF/AFO3-C/AFO350Q.Seq.d/ 1219 0.0
VFD470 (VFD470Q) /CSM/VF/VFD4-C/VFD470Q.Seq.d/ 1209 0.0
CFF878 (CFF878Q) /CSM/CF/CFF8-D/CFF878Q.Seq.d/ 1185 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence. 66 8e-17 15
AZ679651|AZ679651.1 ENTGO79TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 2e-08 3
AX144690|AX144690.1 Sequence 3412 from Patent WO0134809. 52 4e-08 2
AR485326|AR485326.1 Sequence 3412 from patent US 6703492. 52 4e-08 2
AF269370|AF269370.1 Staphylococcus epidermidis strain SR1 clone step.1002g03 genomic sequence. 52 4e-08 2
AX145696|AX145696.1 Sequence 4418 from Patent WO0134809. 52 4e-08 2
AR486332|AR486332.1 Sequence 4418 from patent US 6703492. 52 4e-08 2
AF270378|AF270378.1 Staphylococcus epidermidis strain SR1 clone step.4032h11 genomic sequence. 52 4e-08 2
AX145701|AX145701.1 Sequence 4423 from Patent WO0134809. 52 5e-08 2
AR486337|AR486337.1 Sequence 4423 from patent US 6703492. 52 5e-08 2
dna update 2004. 8. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM910988_95(AM910988|pid:none) Plasmodium knowlesi strain H chro... 172 3e-42
FB782119_1(FB782119|pid:none) Sequence 1392 from Patent WO200803... 149 2e-34
AB023785_1(AB023785|pid:none) Streptomyces griseus gene for ORF3... 149 2e-34
AL939114_9(AL939114|pid:none) Streptomyces coelicolor A3(2) comp... 149 3e-34
CP000102_1157(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 147 8e-34
EF531339_81(EF531339|pid:none) Candidatus Chloracidobacterium th... 144 6e-33
CP001078_293(CP001078|pid:none) Clostridium botulinum E3 str. Al... 142 2e-32
(Q9WXZ5) RecName: Full=Glucosamine--fructose-6-phosphate aminotr... 142 3e-32
AJ872273_3(AJ872273|pid:none) Thermotoga sp. RQ2 16S rRNA gene, ... 142 3e-32
CT573072_122(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 140 9e-32
protein update 2009. 4.25
PSORT

psg: 0.66 gvh: 0.37 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for AFL243 is cyt

5' end seq. ID AFL243F
5' end seq.
>AFL243F.Seq
TTNAAATATGCAAGTTTAAATACAACTAGTGATGCAATTACAAGATTAAAATCTGTAGCA
CATTTACATAAAGGTCATGTTATTGGTATTGCACATACAAGATGGGCAACTCATGGTGGT
AAAACTGATAAAAATGCACATCCACATCTTGATTATAAAGATAGAGTTGCAGTTATTCAT
AATGGTGTAATTGAAAATAATATTATATTAAAAGAAGAACTTGAAAAGAAAGGTATTGTT
TTTAGATCAGAAACTGATACTGAAGTTATTGCACAATTAATTGGTTTATTTTTAGATCAA
GGATTACAAATTGTTGATGCAATTAAAGAAACACAAAAGAAATTACAAGGTACATGGGGT
ATTGCAGTAGTTTGTAAGGATAATCCTGATCAAATTGTAGCAGCAAGAAATGGTAGTCCA
TTATTAATTGGTATTGGAAAGGATCGTATGTTTATTGCAAGTGAACCAGGTGCATTTTCA
AGACATACCAAAGAGTTTATTTCAATGGAAAATGGTGAGATTGCAGTATTGAAAGCTGAT
GGACATTCATTGGATTTAAGTAGAATTGAAATGGCAGCACATGAA----------
Length of 5' end seq. 585
3' end seq. ID AFL243Z
3' end seq.
>AFL243Z.Seq
----------TCTCAATTGTAAATGCCGTTGGTTCATTGATTGCAAGAAGTTCAATTTGT
AGTGTCTATTTAAATGCAGGTCGTGAACATGCTGTAGCTTCAACCAAAGCATTCTCATCA
CAAGTTACAGTATTATCATTGGTTGCAAATTGGTTCGCTCAACATAGAGGCATCGAAGAG
GGTAAAAGACGTCAGGTTAATCGATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGC
ATTACGTGTTCGTGAACAATGTAAAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAAT
CTTTGTTTTGGGTAAAGGTTTCGCTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAA
AGAAATCACCTATTGTCATGCTGAAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATT
CGCTCTCATTGAACAAGATACACCAATTATCTTGATCATTTTAGATGATAGTAATTCTCC
ATTAATGAGAGTCGCCGCTGAAGAAGTAAAAGCAAGAGGTGCTCATACTATCGTCATTAC
AAATAATTCAACTTTGGCTAAACATATCGCTCATGATACCATTTTAATTCCAAGTAATGG
TATTTTAACTGCACTTTTAGCTGCAATTCCATTACAATTATAGCTTANAAAGGCAATTGT
AAAAATATGACCCAGACGTCCAAAAAATTAGCCAAAAC
Length of 3' end seq. 688
Connected seq. ID AFL243P
Connected seq.
>AFL243P.Seq
TTNAAATATGCAAGTTTAAATACAACTAGTGATGCAATTACAAGATTAAAATCTGTAGCA
CATTTACATAAAGGTCATGTTATTGGTATTGCACATACAAGATGGGCAACTCATGGTGGT
AAAACTGATAAAAATGCACATCCACATCTTGATTATAAAGATAGAGTTGCAGTTATTCAT
AATGGTGTAATTGAAAATAATATTATATTAAAAGAAGAACTTGAAAAGAAAGGTATTGTT
TTTAGATCAGAAACTGATACTGAAGTTATTGCACAATTAATTGGTTTATTTTTAGATCAA
GGATTACAAATTGTTGATGCAATTAAAGAAACACAAAAGAAATTACAAGGTACATGGGGT
ATTGCAGTAGTTTGTAAGGATAATCCTGATCAAATTGTAGCAGCAAGAAATGGTAGTCCA
TTATTAATTGGTATTGGAAAGGATCGTATGTTTATTGCAAGTGAACCAGGTGCATTTTCA
AGACATACCAAAGAGTTTATTTCAATGGAAAATGGTGAGATTGCAGTATTGAAAGCTGAT
GGACATTCATTGGATTTAAGTAGAATTGAAATGGCAGCACATGAA----------TCTCA
ATTGTAAATGCCGTTGGTTCATTGATTGCAAGAAGTTCAATTTGTAGTGTCTATTTAAAT
GCAGGTCGTGAACATGCTGTAGCTTCAACCAAAGCATTCTCATCACAAGTTACAGTATTA
TCATTGGTTGCAAATTGGTTCGCTCAACATAGAGGCATCGAAGAGGGTAAAAGACGTCAG
GTTAATCGATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGCATTACGTGTTCGTGA
ACAATGTAAAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAATCTTTGTTTTGGGTAA
AGGTTTCGCTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAAAGAAATCACCTATTG
TCATGCTGAAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATTCGCTCTCATTGAACA
AGATACACCAATTATCTTGATCATTTTAGATGATAGTAATTCTCCATTAATGAGAGTCGC
CGCTGAAGAAGTAAAAGCAAGAGGTGCTCATACTATCGTCATTACAAATAATTCAACTTT
GGCTAAACATATCGCTCATGATACCATTTTAATTCCAAGTAATGGTATTTTAACTGCACT
TTTAGCTGCAATTCCATTACAATTATAGCTTANAAAGGCAATTGTAAAAATATGACCCAG
ACGTCCAAAAAATTAGCCAAAAC
Length of connected seq. 1273
Full length Seq ID -
Full length Seq. -
Length of full length seq. -