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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF180
Library SS
(Link to library)
Clone ID SSF180
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSF180Z
(Link to Original site)
Representative DNA sequence 
>SSF180 (SSF180Q) /CSM/SS/SSF1-D/SSF180Q.Seq.d/
XXXXXXXXXXTAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGTTTTAATAAAAAAAA
AAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAAAAAAATA
AAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTTAAAAAAA
AAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTT
CTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGC
ATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCT
CAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAA
AAAAAAATATTTAAAAAAAAAAAAAAA
sequence update 1997.10.18
Translated Amino Acid sequence 
---kkkfnkf*ngivlikkkkkttiisskkkiknkkkknkkk***aipwdlekikkfkkk
iknnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSSTNDAPQVSS
GLIHHIPMQLSQMYKQSLTKKNI*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---kkkfnkf*ngivlikkkkkttiisskkkiknkkkknkkk***aipwdlekikkfkkk
iknnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSSTNDAPQVSS
GLIHHIPMQLSQMYKQSLTKKNI*kkkk


Frame B:
---kknlisfkmv*f**kkkkkplslvvkkk*kikkkkikknnnklyhgt*rk*kslkkk
*kiiknkkkikkktfktllllfgasvklmlrclsppllcitllklr*srapltmllkypq
g*sitflcnslkcissl*qkkifkkkkk


Frame C:
---kki**vlkwysfnkkkkknhyh***kknkk*kkkk*kkiiisytmglrenkkv*kkn
kk**kikkk*kkkllklsfyflvllls*c*gvslplcfallssssdnlelh*rcsssilr
vnpshsyatlsnv*avfnkkkylkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        387   e-106
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        387   e-106
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        387   e-106
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        387   e-106
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        387   e-106
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        387   e-106
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        387   e-106
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        387   e-106
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        387   e-106
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        387   e-106
own update 2004. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                    387   e-135  4
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50   0.027  1
CE294242|CE294242.1 tigr-gss-dog-17000333888238 Dog Library Canis familiaris genomic, genomic survey sequence.    40   0.27   2
AL354046|AL354046.5 Homo sapiens *** SEQUENCING IN PROGRESS *** from PAC  RPCI-1 121M24.    46   0.42   1
AC015922|AC015922.17 Homo sapiens chromosome 17, clone CTD-3157E16, complete sequence.    46   0.42   1
AP005676|AP005676.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1005_D12, WORKING DRAFT SEQUENCE, 1 ordered pieces.    46   0.42   1
AC017095|AC017095.7 Homo sapiens BAC clone RP11-516C4 from 2, complete sequence.    46   0.42   1
AC018382|AC018382.5 Homo sapiens clone RP11-5I19, *** SEQUENCING IN PROGRESS ***, 41 unordered pieces.    46   0.42   1
AV233417|AV233417.1 Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632424I04, 3' end partial sequence.    46   0.42   1
AC104626|AC104626.3 Drosophila melanogaster X BAC RP98-28L7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    44   0.45   2
dna update 2004. 2. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se...    32   9.0
protein update 2009. 1.29
PSORT 

 psg: 0.90  gvh: 0.38  alm: 0.51  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SSF180 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSF180Z
3' end seq. 
>SSF180Z.Seq
----------TAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGTTTTAATAAAAAAAA
AAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAAAAAAATA
AAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTTAAAAAAA
AAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTT
CTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGC
ATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCT
CAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAA
AAAAAAATATTTAAAAAAAAAAAAAAA
Length of 3' end seq. 437
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -