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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF163
Library SS
(Link to library)
Clone ID SSF163
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12814-1
Original site URL
Representative seq. ID SSF163E
(Link to Original site)
Representative DNA sequence 
>SSF163 (SSF163Q) /CSM/SS/SSF1-C/SSF163Q.Seq.d/
CATACATAAACAATGAAAGTTCAACCATTCTCCCAATTTCTTGCTCAACAAGGTAAAATC
TACTGGCCATTTTTAGTTGGTGCAGGTGCTTGGGCTCTCATCATTACTAAAGTTCATATG
GGTATTACTGAGGAAAACAAAGCCAACTCATACTATTGGAAAAAAGTTCAAGCTATCAGA
AACCCAGGTTCCCACTCACATGGTCATGGTCACCACTAAATTTATTCTTTCAATTATATA
ATATAGGTGTTTATTTTTTTTTTTAAAAAAAAAAAAAAGATATAAGATATAAAAACTATA
AAAACTATAAAAAAAAACTAAGAAAAAAAAAATAATAAAACAGT
sequence update 1997.10.21
Translated Amino Acid sequence 
ht*TMKVQPFSQFLAQQGKIYWPFLVGAGAWALIITKVHMGITEENKANSYYWKKVQAIR
NPGSHSHGHGHH*iysfnyii*vfifffkkkkki*diktiktikkn*ekknnkt
Translated Amino Acid sequence (All Frames) 
Frame A:
ht*TMKVQPFSQFLAQQGKIYWPFLVGAGAWALIITKVHMGITEENKANSYYWKKVQAIR
NPGSHSHGHGHH*iysfnyii*vfifffkkkkki*diktiktikkn*ekknnkt


Frame B:
ihkq*kfnhspnfllnkvkstghf*lvqvlglssllkfiwvllrktkpthtigkkfklse
tqvpthmvmvttkfilsii*yrclffflkkkkryki*kl*kl*kktkkkkiikq


Frame C:
yinnesstilpiscstr*nllaifswcrclgshhy*ssygyy*gkqsqlilleksssyqk
prfpltwswsplnlffqlynigvyfff*kkkkdiryknyknykkklrkkk**ns
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK360 (VSK360Q) /CSM/VS/VSK3-C/VSK360Q.Seq.d/                        521   e-147
VSD420 (VSD420Q) /CSM/VS/VSD4-A/VSD420Q.Seq.d/                        521   e-147
SSJ444 (SSJ444Q) /CSM/SS/SSJ4-B/SSJ444Q.Seq.d/                        521   e-147
SSI341 (SSI341Q) /CSM/SS/SSI3-B/SSI341Q.Seq.d/                        521   e-147
SSF163 (SSF163Q) /CSM/SS/SSF1-C/SSF163Q.Seq.d/                        521   e-147
VSH165 (VSH165Q) /CSM/VS/VSH1-C/VSH165Q.Seq.d/                        519   e-147
VSH430 (VSH430Q) /CSM/VS/VSH4-B/VSH430Q.Seq.d/                        513   e-145
AHO439 (AHO439Q) /CSM/AH/AHO4-B/AHO439Q.Seq.d/                        513   e-145
SSM807 (SSM807Q) /CSM/SS/SSM8-A/SSM807Q.Seq.d/                        507   e-143
VSC109 (VSC109Q) /CSM/VS/VSC1-A/VSC109Q.Seq.d/                        500   e-141
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL603747|AL603747.5 Zebrafish DNA sequence from clone BUSM1-22B13 Contains part of a  novel gene for a lysophosphatidic acid receptor, a putative novel  gene and a CpG island.    40  0.75  3
AC135799|AC135799.13 Medicago truncatula clone mth2-11f14, WORKING DRAFT SEQUENCE, 5 unordered pieces.    34  1.7  4
AC121362|AC121362.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009N21, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.    42  4.4  1
CD392476|CD392476.1 Gm_ck11646 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    42  4.4  1
AC114022|AC114022.5 Rattus norvegicus clone CH230-240L6, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  4.4  1
AI499637|AI499637.1 to03c03.x1 NCI_CGAP_Ut2 Homo sapiens cDNA clone IMAGE:2177956 3' similar to gb:X67247_rna1 40S RIBOSOMAL PROTEIN S8 (HUMAN);, mRNA sequence.    42  4.4  1
AX344915|AX344915.1 Sequence 340 from Patent WO0200927.           42  4.4  1
AC132489|AC132489.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    42  4.4  1
BX323848|BX323848.3 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-446F10.    42  4.4  1
BH794058|BH794058.1 ME_MBa0002E06f Manihot esculenta Manihot esculenta genomic clone ME_MBa0002E06f, DNA sequence.    42  4.4  1
dna update 2003. 8.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC109601_27(AC109601|pid:none) Oryza sativa chromosome 3 BAC OSJ...    38   0.097
EF147836_1(EF147836|pid:none) Populus trichocarpa clone WS0125_F...    37   0.22
EU958891_1(EU958891|pid:none) Zea mays clone 208231 unknown mRNA...    35   0.63
EU954255_1(EU954255|pid:none) Zea mays clone 1460261 unknown mRNA.     35   0.63
EU961353_1(EU961353|pid:none) Zea mays clone 234746 unknown mRNA.      35   0.63
EF145742_1(EF145742|pid:none) Populus trichocarpa clone WS0113_B...    35   0.63
AF063866_93(AF063866|pid:none) Melanoplus sanguinipes entomopoxv...    32   9.1
protein update 2009. 3. 5
PSORT 

 psg: 0.81  gvh: 0.60  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SSF163 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSF163E
Full length Seq. 
>SSF163E.Seq
CATACATAAACAATGAAAGTTCAACCATTCTCCCAATTTCTTGCTCAACAAGGTAAAATC
TACTGGCCATTTTTAGTTGGTGCAGGTGCTTGGGCTCTCATCATTACTAAAGTTCATATG
GGTATTACTGAGGAAAACAAAGCCAACTCATACTATTGGAAAAAAGTTCAAGCTATCAGA
AACCCAGGTTCCCACTCACATGGTCATGGTCACCACTAAATTTATTCTTTCAATTATATA
ATATAGGTGTTTATTTTTTTTTTTAAAAAAAAAAAAAAGATATAAGATATAAAAACTATA
AAAACTATAAAAAAAAACTAAGAAAAAAAAAATAATAAAACAGT
Length of full length seq. 344