>SSF159 (SSF159Q) /CSM/SS/SSF1-C/SSF159Q.Seq.d/
XXXXXXXXXXACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGG
AAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTT
CAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAAT
CAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTG
TCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGC
CAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATT
GACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTT
AGTAAAATCAATAAAGCTTCTCATATATAGTACACATTAAAAA

---QQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLES
NQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*
rnfseenisik*is*kiis**nq*sfsyivhik

Frame A:
---QQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLES
NQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*
rnfseenisik*is*kiis**nq*sfsyivhik


Frame B:
---nkmnnkkivlnqrinwkimhsllkiqlkmkklqpkfqiqinqllnlklkvysng*nq
ikpqkrmnmkir*kp*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*id
gifqrktslsnrflkk**vskinkashi*ytlk


Frame C:
---tr*ttkrsc*ike*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvrik
snrrkg*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlt
effrgkhlyqidflknnklvksiklliysth*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK478 (SSK478Q) /CSM/SS/SSK4-D/SSK478Q.Seq.d/                        898   0.0
SSJ888 (SSJ888Q) /CSM/SS/SSJ8-D/SSJ888Q.Seq.d/                        898   0.0
SSF159 (SSF159Q) /CSM/SS/SSF1-C/SSF159Q.Seq.d/                        898   0.0
SSE694 (SSE694Q) /CSM/SS/SSE6-D/SSE694Q.Seq.d/                        898   0.0
SSE386 (SSE386Q) /CSM/SS/SSE3-D/SSE386Q.Seq.d/                        898   0.0
SLH812 (SLH812Q) /CSM/SL/SLH8-A/SLH812Q.Seq.d/                        898   0.0
SLD412 (SLD412Q) /CSM/SL/SLD4-A/SLD412Q.Seq.d/                        898   0.0
SLC207 (SLC207Q) /CSM/SL/SLC2-A/SLC207Q.Seq.d/                        898   0.0
FC-AS03 (FC-AS03Q) /CSM/FC/FC-AS/FC-AS03Q.Seq.d/                      898   0.0
CHS481 (CHS481Q) /CSM/CH/CHS4-D/CHS481Q.Seq.d/                        898   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   898   0.0    1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   888   0.0    1
AU281126|AU281126.1 Molgula tectiformis mRNA, clone:MT17A2E07T, 3' end.    56   7e-06  2
AC141650|AC141650.6 Rattus norvegicus clone CH230-368F22, WORKING DRAFT SEQUENCE, 37 unordered pieces.    44   8e-06  6
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein  70.    44   1e-05  2
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds.    44   1e-05  2
AU282860|AU282860.1 Molgula tectiformis mRNA, clone:MT06B2C04T, 3' end.    56   1e-05  2
AC006874|AC006874.1 Caenorhabditis elegans clone Y54E10, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   1e-04  10
AC106957|AC106957.6 Rattus norvegicus clone CH230-119F9, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44   0.002  8
AL117202|AL117202.1 Caenorhabditis elegans YAC Y47D3A.             38   0.002  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   197   9e-50
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   197   9e-50
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           127   2e-28
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   113   2e-24
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   112   4e-24
(P24629) RecName: Full=Heat shock cognate 70 kDa protein 1;  &FB...   110   2e-23
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   109   3e-23
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   109   3e-23
AY035123_1(AY035123|pid:none) Arabidopsis thaliana putative dnaK...   109   3e-23
X77199_1(X77199|pid:none) A.thaliana hsc70-1 gene.                    109   3e-23

 psg: 0.75  gvh: 0.20  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSF159 is nuc

>SSF159Z.Seq
----------ACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGG
AAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTT
CAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAAT
CAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTG
TCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGC
CAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATT
GACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTT
AGTAAAATCAATAAAGCTTCTCATATATAGTACACATTAAAAA