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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF156
Library SS
(Link to library)
Clone ID SSF156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15108-1
Original site URL
Representative seq. ID SSF156E
(Link to Original site)
Representative DNA sequence 
>SSF156 (SSF156Q) /CSM/SS/SSF1-C/SSF156Q.Seq.d/
CAAAAAAATAATATTAAACAAATCTTAAAAAAAGATTTTATTCATAAATAAACTATAAAA
TGTCAAACAACCCAGCTGATGATGAAGGATATAATGAGTATTTATATAAAATTTTAGTTG
TTGGTGATATTGGTACTGGTAAAACTTCAATTATTAAAAGATTTGTTCATAATATATTCT
CTATGCATTATAAATCAACCATTGGTGTAGATTTTGCATTAAAAGTGATTAATTGGGATC
CAAAAACCGAAGTTAGATTACAATTATGGGATATTGCAGGTCAAGAAAGATTTGGATCAA
TGACAAGAGTTTATTATAAAGAAGCAGTTGGAGCAATGATTACATTTGATGTTACTAGAA
TGAGTACATTTGAAGCAGTTGCTAAATGGAAAGCAGATATTGATTCTAAAGTAACTTATG
GTGCAGATGAAAAACCAATTCCAGTAGTTTTATTAGCAAACAAATGTGATAAGATGCATT
CATCAAGACTGCAAACGATATGGATAAATATTGTAAAGATAATGGTTTCATTGGTTGGTT
CGAAACTAGTGCTAAAGAAAATNTGNATATTGAAAAAGCAGCACGTTTCTTGGTTGATCA
TATCTTAAAGAATGATGTGTTAGAAGAAATCAACCAATTGAAGGTACAATTCAACCAGGC
GATCTCAATAAACAACCACAACCAACTTCAACTGGTCCAAGTTGTTGTAAATAAAANAAA
AAAAAAATTTAAAAAATTTAAAAAAAAAAAAAAAAAAAAGAAATTATCAATATATTTATA
TAAATAATTTTAGAATAATTTCAATTTTTTTTAGGAAAA
sequence update 1999. 4. 6
Translated Amino Acid sequence 
kk*y*tnlkkrfys*INYKMSNNPADDEGYNEYLYKILVVGDIGTGKTSIIKRFVHNIFS
MHYKSTIGVDFALKVINWDPKTEVRLQLWDIAGQERFGSMTRVYYKEAVGAMITFDVTRM
STFEAVAKWKADIDSKVTYGADEKPIPVVLLANKCDKMHSSRLQTIWINIVKIMVSLVGS
KLVLKKXXILKKQHVSWLIIS*rmmc*kkstn*rynstrrsq*ttttnfnwskll*ikxk
knlknlkkkkkkrnyqyiyinnfriisiffrk
Translated Amino Acid sequence (All Frames) 
Frame A:
qknnikqilkkdfihk*tikcqttqlmmkdimsiyikf*llvilvlvklqllkdlfiiys
lciinqplv*ilh*k*ligiqkpkldynygilqvkkdldq*qefiikkqleq*lhlmlle
*vhlkqllngkqililk*lmvqmknqfq*fy*qtnvircihqdckryg*il*r*wfhwlv
rn*c*rkxxy*ksstflg*sylke*cvrrnqpiegtiqpgdlnkqpqptstgpscck*xk
kki*ki*kkkkkkeiinifi*iile*fqfflgk


Frame B:
kkiilnks*kkilfinkl*nvkqps***ri**vfi*nfscw*ywyw*nfny*kics*yil
yal*inhwcrfciksd*lgsknrs*itimgycrsrkiwindksll*rsswsndyi*cy*n
eyi*ssc*mesry*f*snlwcr*ktnsssfiskqm**dafiktandmdkyckdngfigwf
etsakenxxiekaarflvdhilkndvleeinqlkvqfnqaisinnhnqlqlvqvvvnkxk
kkfkkfkkkkkkkklsiylyk*f*nnfnff*e


Frame C:
kk*y*tnlkkrfys*INYKMSNNPADDEGYNEYLYKILVVGDIGTGKTSIIKRFVHNIFS
MHYKSTIGVDFALKVINWDPKTEVRLQLWDIAGQERFGSMTRVYYKEAVGAMITFDVTRM
STFEAVAKWKADIDSKVTYGADEKPIPVVLLANKCDKMHSSRLQTIWINIVKIMVSLVGS
KLVLKKXXILKKQHVSWLIIS*rmmc*kkstn*rynstrrsq*ttttnfnwskll*ikxk
knlknlkkkkkkrnyqyiyinnfriisiffrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF156 (SSF156Q) /CSM/SS/SSF1-C/SSF156Q.Seq.d/                       1269   0.0
SSC295 (SSC295Q) /CSM/SS/SSC2-D/SSC295Q.Seq.d/                       1209   0.0
SSH163 (SSH163Q) /CSM/SS/SSH1-C/SSH163Q.Seq.d/                       1094   0.0
SSI861 (SSI861Q) /CSM/SS/SSI8-C/SSI861Q.Seq.d/                       1090   0.0
SSA571 (SSA571Q) /CSM/SS/SSA5-C/SSA571Q.Seq.d/                       1065   0.0
SSC230 (SSC230Q) /CSM/SS/SSC2-B/SSC230Q.Seq.d/                        961   0.0
SSF766 (SSF766Q) /CSM/SS/SSF7-C/SSF766Q.Seq.d/                        936   0.0
SSG257 (SSG257Q) /CSM/SS/SSG2-C/SSG257Q.Seq.d/                        664   0.0
SSF581 (SSF581Q) /CSM/SS/SSF5-D/SSF581Q.Seq.d/                        652   0.0
SSL449 (SSL449Q) /CSM/SS/SSL4-C/SSL449Q.Seq.d/                        341   1e-92
own update 2000. 8.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF116859|AF116859.1 Dictyostelium discoideum small GTPase rabE (RabE) gene, complete cds.   444  0.0  4
U02925|U02925.1 Dictyostelium discoideum Ax3 Rab11 mRNA, complete cds.    46  2e-11  4
CA302359|CA302359.1 taa14a01.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to TR:Q26683 Q26683 GTP-BINDING PROTEIN RTB2 ;, mRNA sequence.    44  2e-06  2
BG665453|BG665453.1 DRACDA09 Rat DRG Library Rattus norvegicus cDNA clone DRACDA09 5', mRNA sequence.    42  6e-06  3
AX300905|AX300905.1 Sequence 11 from Patent WO0185989.            62  1e-05  1
M94043|M94043.1 Rat rab-related GTP-binding protein mRNA, complete cds.    42  3e-05  3
AW630384|AW630384.1 hh82d06.y1 NCI_CGAP_GU1 Homo sapiens cDNA clone IMAGE:2969291 5' similar to TR:Q63483 Q63483 RAB-RELATED GTP-BINDING PROTEIN. ;, mRNA sequence.    52  4e-05  2
BY140275|BY140275.1 Mus musculus 17.5 days embryo whole body cDNA, RIKEN full-length enriched library, clone:L930131K11, 5' end partial sequence.    60  5e-05  1
BY709082|BY709082.1 Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310011F14, 5' end partial sequence.    60  5e-05  1
BY105763|BY105763.1 Mus musculus cDNA, RIKEN full-length enriched library, clone:K630162F13, 5' end partial sequence.    60  5e-05  1
dna update 2003. 8.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC066502_1(BC066502|pid:none) Danio rerio RAB32, member RAS onco...   198   2e-62
DQ414572_1(DQ414572|pid:none) Suberites domuncula Rab32 gene, co...   202   4e-62
BC049531_1(BC049531|pid:none) Danio rerio RAB32, member RAS onco...   198   6e-62
(Q8QZZ8) RecName: Full=Ras-related protein Rab-38;  &AB232634_1(...   197   6e-62
BC070513_1(BC070513|pid:none) Rattus norvegicus RAB38, member RA...   197   1e-61
AF136172_1(AF136172|pid:none) Homo sapiens rab-related GTP-bindi...   196   3e-61
AY890954_1(AY890954|pid:none) Synthetic construct Homo sapiens c...   195   7e-60
(Q13637) RecName: Full=Ras-related protein Rab-32;  &AF498958_1(...   195   7e-60
AY890955_1(AY890955|pid:none) Synthetic construct Homo sapiens c...   195   3e-59
(Q06AU5) RecName: Full=Ras-related protein Rab-32;  &DQ917630_1(...   192   3e-59
protein update 2009. 7. 7
PSORT 

 psg: 0.46  gvh: 0.38  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSF156 is nuc
5' end seq. ID SSF156F
5' end seq. 
>SSF156F.Seq
CAAAAAAATAATATTAAACAAATCTTAAAAAAAGATTTTATTCATAAATAAACTATAAAA
TGTCAAACAACCCAGCTGATGATGAAGGATATAATGAGTATTTATATAAAATTTTAGTTG
TTGGTGATATTGGTACTGGTAAAACTTCAATTATTAAAAGATTTGTTCATAATATATTCT
CTATGCATTATAAATCAACCATTGGTGTAGATTTTGCATTAAAAGTGATTAATTGGGATC
CAAAAACCGAAGTTAGATTACAATTATGGGATATTGCAGGTCAAGAAAGATTTGGATCAA
TGACAAGAGTTTATTATAAAGAAGCAGTTGGAGCAATGATTACATTTGATGTTACTAGAA
TGAGTACATTTGAAGCAGTTGCTAAATGGAAAGCAGATATTGATTCTAAAGTAACTTATG
GTGCAGATGAAAAACCAATTCCAGTAGTTTTATTAGCAAACAAATGTGATTTAGGTAAAG
ATGCATTCATCAAGACTGCAAACGATATGGATAAATATTGTAAAGATAATGGTTTCATTG
GTTGGTTCGAAACTAGTGCTAAAGAAAATATGAATATTGAAAAAGCAGCACGTTTCTTGG
TTGATCATATCTTAAAGAATGATGT----------
Length of 5' end seq. 625
3' end seq. ID SSF156Z
3' end seq. 
>SSF156Z.Seq
----------AAGATGCATTCATCAAGACTGCAAACGATATGGATNAATATTGTAAAGNT
AATGGTTTCATTGGTTGGTTCGAAACTAGTGCTAAAGAAAATCTGCATATTGAAAAAGCA
GCACGTTTCTTGGTTGATCATATCTTAAAGAATGATGTTAGAAGAAATCAACCAATTGAA
GGTACAATTCAACCAGGCGATCTCAATAAACAACCACAACCAACTTCAACTGGTCCAAGT
TGTTGTAAATAAAANAAAAAAAAAATTTAAAAAATTTAAAAAAAAAAAAAAAAAAAAGAA
ATTATCAATATATTTATATAAATAATTTTAGAATAATTTCAATTTTTTTTAGGAAAAAAA
AA
Length of 3' end seq. 352
Connected seq. ID SSF156P
Connected seq. 
>SSF156P.Seq
CAAAAAAATAATATTAAACAAATCTTAAAAAAAGATTTTATTCATAAATAAACTATAAAA
TGTCAAACAACCCAGCTGATGATGAAGGATATAATGAGTATTTATATAAAATTTTAGTTG
TTGGTGATATTGGTACTGGTAAAACTTCAATTATTAAAAGATTTGTTCATAATATATTCT
CTATGCATTATAAATCAACCATTGGTGTAGATTTTGCATTAAAAGTGATTAATTGGGATC
CAAAAACCGAAGTTAGATTACAATTATGGGATATTGCAGGTCAAGAAAGATTTGGATCAA
TGACAAGAGTTTATTATAAAGAAGCAGTTGGAGCAATGATTACATTTGATGTTACTAGAA
TGAGTACATTTGAAGCAGTTGCTAAATGGAAAGCAGATATTGATTCTAAAGTAACTTATG
GTGCAGATGAAAAACCAATTCCAGTAGTTTTATTAGCAAACAAATGTGATTTAGGTAAAG
ATGCATTCATCAAGACTGCAAACGATATGGATAAATATTGTAAAGATAATGGTTTCATTG
GTTGGTTCGAAACTAGTGCTAAAGAAAATATGAATATTGAAAAAGCAGCACGTTTCTTGG
TTGATCATATCTTAAAGAATGATGT----------AAGATGCATTCATCAAGACTGCAAA
CGATATGGATNAATATTGTAAAGNTAATGGTTTCATTGGTTGGTTCGAAACTAGTGCTAA
AGAAAATCTGCATATTGAAAAAGCAGCACGTTTCTTGGTTGATCATATCTTAAAGAATGA
TGTTAGAAGAAATCAACCAATTGAAGGTACAATTCAACCAGGCGATCTCAATAAACAACC
ACAACCAACTTCAACTGGTCCAAGTTGTTGTAAATAAAANAAAAAAAAAATTTAAAAAAT
TTAAAAAAAAAAAAAAAAAAAAGAAATTATCAATATATTTATATAAATAATTTTAGAATA
ATTTCAATTTTTTTTAGGAAAAAAAAA
Length of connected seq. 977
Full length Seq ID SSF156E
Full length Seq. 
>SSF156E.Seq
CAAAAAAATAATATTAAACAAATCTTAAAAAAAGATTTTATTCATAAATAAACTATAAAA
TGTCAAACAACCCAGCTGATGATGAAGGATATAATGAGTATTTATATAAAATTTTAGTTG
TTGGTGATATTGGTACTGGTAAAACTTCAATTATTAAAAGATTTGTTCATAATATATTCT
CTATGCATTATAAATCAACCATTGGTGTAGATTTTGCATTAAAAGTGATTAATTGGGATC
CAAAAACCGAAGTTAGATTACAATTATGGGATATTGCAGGTCAAGAAAGATTTGGATCAA
TGACAAGAGTTTATTATAAAGAAGCAGTTGGAGCAATGATTACATTTGATGTTACTAGAA
TGAGTACATTTGAAGCAGTTGCTAAATGGAAAGCAGATATTGATTCTAAAGTAACTTATG
GTGCAGATGAAAAACCAATTCCAGTAGTTTTATTAGCAAACAAATGTGATAAGATGCATT
CATCAAGACTGCAAACGATATGGATAAATATTGTAAAGATAATGGTTTCATTGGTTGGTT
CGAAACTAGTGCTAAAGAAAATNTGNATATTGAAAAAGCAGCACGTTTCTTGGTTGATCA
TATCTTAAAGAATGATGTGTTAGAAGAAATCAACCAATTGAAGGTACAATTCAACCAGGC
GATCTCAATAAACAACCACAACCAACTTCAACTGGTCCAAGTTGTTGTAAATAAAANAAA
AAAAAAATTTAAAAAATTTAAAAAAAAAAAAAAAAAAAAGAAATTATCAATATATTTATA
TAAATAATTTTAGAATAATTTCAATTTTTTTTAGGAAAA
Length of full length seq. 819