NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL240
Library AF
(Link to library)
Clone ID AFL240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13900-1
Original site URL
Representative seq. ID AFL240P
(Link to Original site)
Representative DNA sequence 
>AFL240 (AFL240Q) /CSM/AF/AFL2-B/AFL240Q.Seq.d/
AACAAAAGACAATATTAAAAAATTAAAGAAAACTAAAGTTATNTAATAACTATAACTTTT
TGAGTTTTAGTTATTCTATATATCAAAAATTTTAAAAATAATCAACTCAATCATTTCAAA
ATCTCATAATAATATGGGAAATTGTTGTTCATCATCCAAACGATCAAACGGATATGATTC
AACAGATGATAGAATACTAGAAGAATCATTAGATATTAAAGGTGGTCATAATAACAATAA
TCATGGTGGTGGACACCATCATCATCACCATCATCACCACCATCACATTAAAAGAAATTC
AAATGGTGGATTATATAATAATGAAATGAAATCAATTTCATCTGAAAATAATAATAATAA
CAATAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAAAAGAAATTC
ATTAAAATCATCATCACAACATAAATTATTAGTTGATGAAGAGAAAGAAGATTTAATATC
AGCATCAGTTCATCAAAAAGATCCATATGATTTATCAACTTCATCAACTTTAACAAATCA
TAGTAGTACAAATACATTGGTTAGTXXXXXXXXXXGGTTTTCAAAGAGTAAAGCATAACT
CTACATCTTCATTGTATATAAAAAGTACATTATCAACACCTGATAATGATGAAATTTTAA
GATGTATGGCAAATGCATTATTGTATCATATTGAAAGAGGTTCACAATTCCCTCAAAAAA
CTGTTGAAATTTTTAGTGAAGAAAAATATCCAATTACTAAAAATAAAATTGATTTAAAAT
CAAATCCAACAGTTGAAACTATTTATAAATTTATTAGAGATATTTTTAAAGCCGAGAAAT
TAGATAGTGAATGTGCAATTATGTGTTTAGCTTATATTGAAAGAATAATAACGTATACTG
GTATTACATTAAGTTCAATTAATTGGAGAAGGATAGTTTTATCAGCATTAATTTTGGCAT
CAAAAGTTTGGGAAGATCAAAGTGTTTGGAATGTTGATTTCTTACCAGTATTCGATAATT
TAACAGCGGCCGATTTAAATTGTCTAGAGAGACAATTCCTTGCAATGTTACAATACAACG
TTAGTTTGAACGCTTCAATCTATGCAAAATACTATTTCGAGTTGAGAAATTTCTCAAAGT
TAGACTCCAATCAATTCCCTTTGAAACCGTTGGATAAATCTGGTGTTAGAAGATTGGAAG
ATCATTCAAAGGCTTCGGAATATAGAGTAAAACCATTTAAAAGAAGTGCTAGTGTNATCA
AATNATCCACCCGAAATTCATACAAGAGC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
tkdnikklkktkvx**l*lfef*LFYISKILKIINSIISKSHNNMGNCCSSSKRSNGYDS
TDDRILEESLDIKGGHNNNNHGGGHHHHHHHHHHHIKRNSNGGLYNNEMKSISSENNNNN
NNNNNNNNNNNNNNNNKRNSLKSSSQHKLLVDEEKEDLISASVHQKDPYDLSTSSTLTNH
SSTNTLVS---

---GFQRVKHNSTSSLYIKSTLSTPDNDEILRCMANALLYHIERGSQFPQKTVEIFSEEK
YPITKNKIDLKSNPTVETIYKFIRDIFKAEKLDSECAIMCLAYIERIITYTGITLSSINW
RRIVLSALILASKVWEDQSVWNVDFLPVFDNLTAADLNCLERQFLAMLQYNVSLNASIYA
KYYFELRNFSKLDSNQFPLKPLDKSGVRRLEDHSKASEYRVKPFKRSASVIKXSTRNSYK
S
Translated Amino Acid sequence (All Frames) 
Frame A:
nkrqy*kiken*syxititf*vlvilyiknfknnqlnhfkis**ygkllfiiqtikri*f
nr**ntrriiry*rws**q*swwwtpssspssppsh*kkfkwwii***neinfi*k****
q*qqq************kkfikiiitt*iis**rerrfnisissskrsi*finfinfnks
**ykyig*---

---GFQRVKHNSTSSLYIKSTLSTPDNDEILRCMANALLYHIERGSQFPQKTVEIFSEEK
YPITKNKIDLKSNPTVETIYKFIRDIFKAEKLDSECAIMCLAYIERIITYTGITLSSINW
RRIVLSALILASKVWEDQSVWNVDFLPVFDNLTAADLNCLERQFLAMLQYNVSLNASIYA
KYYFELRNFSKLDSNQFPLKPLDKSGVRRLEDHSKASEYRVKPFKRSASVIKXSTRNSYK
S

Frame B:
tkdnikklkktkvx**l*lfef*LFYISKILKIINSIISKSHNNMGNCCSSSKRSNGYDS
TDDRILEESLDIKGGHNNNNHGGGHHHHHHHHHHHIKRNSNGGLYNNEMKSISSENNNNN
NNNNNNNNNNNNNNNNKRNSLKSSSQHKLLVDEEKEDLISASVHQKDPYDLSTSSTLTNH
SSTNTLVS---

---vfke*sitlhlhci*kvhyqhlimmkf*dvwqmhyciilkevhnslkkllkflvkkn
iqllkikli*nqiqqlklfinlleiflkprn*ivnvqlcv*lilke**rilvlh*vqlig
eg*fyqh*fwhqkfgkikvfgmlisyqysii*qrpi*iv*rdnslqcynttlv*tlqsmq
ntiss*eisqs*tpinsl*nrwinlvledwkiiqrlrnie*nhlkevlvxsnxppeihtr

Frame C:
qktilkn*rklklxnnynflsfsysiyqkf*k*stqsfqnliiiweivvhhpndqtdmiq
qmiey*knh*ilkvviitiimvvdtiiitiittitlkeiqmvdyiimk*nqfhlkiiiit
itttiiiiiiiiiiiikeih*nhhhniny*lmkrkki*yqhqfikkihmiyqlhql*qii
vvqihwl---

---fskska*lyifivykkyiint****nfkmygkciivsy*krftipsknc*nf**rki
sny*k*n*fkiksns*nyl*iy*ryf*sreir**mcnyvfsly*knnnvywyyikfn*le
kdsfisinfgikslgrskclec*fltsir*fnsgrfklsretipcnvtiqr*ferfnlck
ilfrvekflkvrlqsipfetvg*iwc*kigrsfkgfgi*skti*kkc*cxqxihpkfiqe
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL240 (AFL240Q) /CSM/AF/AFL2-B/AFL240Q.Seq.d/                       1669   0.0
AFO739 (AFO739Q) /CSM/AF/AFO7-B/AFO739Q.Seq.d/                       1402   0.0
AFN885 (AFN885Q) /CSM/AF/AFN8-D/AFN885Q.Seq.d/                       1328   0.0
SSA445 (SSA445Q) /CSM/SS/SSA4-B/SSA445Q.Seq.d/                       1318   0.0
AFI243 (AFI243Q) /CSM/AF/AFI2-B/AFI243Q.Seq.d/                       1296   0.0
SLA802 (SLA802Q) /CSM/SL/SLA8-A/SLA802Q.Seq.d/                       1292   0.0
AFD763 (AFD763Q) /CSM/AF/AFD7-C/AFD763Q.Seq.d/                       1243   0.0
AFJ628 (AFJ628Q) /CSM/AF/AFJ6-B/AFJ628Q.Seq.d/                       1138   0.0
AFD261 (AFD261Q) /CSM/AF/AFD2-C/AFD261Q.Seq.d/                        979   0.0
AFD226 (AFD226Q) /CSM/AF/AFD2-B/AFD226Q.Seq.d/                        932   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   985   0.0    12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   2e-14  25
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   3e-11  26
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   1e-10  33
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   3e-10  19
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   4e-09  24
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   4e-09  22
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    40   2e-08  23
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34   6e-08  17
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    36   6e-08  21
dna update 2004. 8. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116100_4(AC116100|pid:none) Dictyostelium discoideum chromosom...   435   e-120
BT059267_1(BT059267|pid:none) Salmo salar clone ssal-rgf-537-296...   199   2e-49
AF429969_1(AF429969|pid:none) Homo sapiens cyclin-box carrying p...   197   5e-49
AF465728_1(AF465728|pid:none) Homo sapiens cyclin fold protein 1...   197   5e-49
(Q96P45) RecName: Full=Cyclin-Y; AltName: Full=Cyclin fold prote...   197   5e-49
AK057280_1(AK057280|pid:none) Homo sapiens cDNA FLJ32718 fis, cl...   195   2e-48
BC149897_1(BC149897|pid:none) Bos taurus cyclin Y, mRNA (cDNA cl...   194   5e-48
BC035524_1(BC035524|pid:none) Mus musculus RIKEN cDNA 5730405I09...   194   7e-48
(Q8BGU5) RecName: Full=Cyclin-Y; AltName: Full=Cyclin fold prote...   194   7e-48
AF413522_1(AF413522|pid:none) Homo sapiens cyclin-box carrying p...   192   2e-47
protein update 2009. 4.25
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for AFL240 is cyt
5' end seq. ID AFL240F
5' end seq. 
>AFL240F.Seq
AACAAAAGACAATATTAAAAAATTAAAGAAAACTAAAGTTATNTAATAACTATAACTTTT
TGAGTTTTAGTTATTCTATATATCAAAAATTTTAAAAATAATCAACTCAATCATTTCAAA
ATCTCATAATAATATGGGAAATTGTTGTTCATCATCCAAACGATCAAACGGATATGATTC
AACAGATGATAGAATACTAGAAGAATCATTAGATATTAAAGGTGGTCATAATAACAATAA
TCATGGTGGTGGACACCATCATCATCACCATCATCACCACCATCACATTAAAAGAAATTC
AAATGGTGGATTATATAATAATGAAATGAAATCAATTTCATCTGAAAATAATAATAATAA
CAATAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAAAAGAAATTC
ATTAAAATCATCATCACAACATAAATTATTAGTTGATGAAGAGAAAGAAGATTTAATATC
AGCATCAGTTCATCAAAAAGATCCATATGATTTATCAACTTCATCAACTTTAACAAATCA
TAGTAGTACAAATACATTGGTTAGT----------
Length of 5' end seq. 565
3' end seq. ID AFL240Z
3' end seq. 
>AFL240Z.Seq
----------GGTTTTCAAAGAGTAAAGCATAACTCTACATCTTCATTGTATATAAAAAG
TACATTATCAACACCTGATAATGATGAAATTTTAAGATGTATGGCAAATGCATTATTGTA
TCATATTGAAAGAGGTTCACAATTCCCTCAAAAAACTGTTGAAATTTTTAGTGAAGAAAA
ATATCCAATTACTAAAAATAAAATTGATTTAAAATCAAATCCAACAGTTGAAACTATTTA
TAAATTTATTAGAGATATTTTTAAAGCCGAGAAATTAGATAGTGAATGTGCAATTATGTG
TTTAGCTTATATTGAAAGAATAATAACGTATACTGGTATTACATTAAGTTCAATTAATTG
GAGAAGGATAGTTTTATCAGCATTAATTTTGGCATCAAAAGTTTGGGAAGATCAAAGTGT
TTGGAATGTTGATTTCTTACCAGTATTCGATAATTTAACAGCGGCCGATTTAAATTGTCT
AGAGAGACAATTCCTTGCAATGTTACAATACAACGTTAGTTTGAACGCTTCAATCTATGC
AAAATACTATTTCGAGTTGAGAAATTTCTCAAAGTTAGACTCCAATCAATTCCCTTTGAA
ACCGTTGGATAAATCTGGTGTTAGAAGATTGGAAGATCATTCAAAGGCTTCGGAATATAG
AGTAAAACCATTTAAAAGAAGTGCTAGTGTNATCAAATNATCCACCCGAAATTCATACAA
GAGC
Length of 3' end seq. 714
Connected seq. ID AFL240P
Connected seq. 
>AFL240P.Seq
AACAAAAGACAATATTAAAAAATTAAAGAAAACTAAAGTTATNTAATAACTATAACTTTT
TGAGTTTTAGTTATTCTATATATCAAAAATTTTAAAAATAATCAACTCAATCATTTCAAA
ATCTCATAATAATATGGGAAATTGTTGTTCATCATCCAAACGATCAAACGGATATGATTC
AACAGATGATAGAATACTAGAAGAATCATTAGATATTAAAGGTGGTCATAATAACAATAA
TCATGGTGGTGGACACCATCATCATCACCATCATCACCACCATCACATTAAAAGAAATTC
AAATGGTGGATTATATAATAATGAAATGAAATCAATTTCATCTGAAAATAATAATAATAA
CAATAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAAAAGAAATTC
ATTAAAATCATCATCACAACATAAATTATTAGTTGATGAAGAGAAAGAAGATTTAATATC
AGCATCAGTTCATCAAAAAGATCCATATGATTTATCAACTTCATCAACTTTAACAAATCA
TAGTAGTACAAATACATTGGTTAGT----------GGTTTTCAAAGAGTAAAGCATAACT
CTACATCTTCATTGTATATAAAAAGTACATTATCAACACCTGATAATGATGAAATTTTAA
GATGTATGGCAAATGCATTATTGTATCATATTGAAAGAGGTTCACAATTCCCTCAAAAAA
CTGTTGAAATTTTTAGTGAAGAAAAATATCCAATTACTAAAAATAAAATTGATTTAAAAT
CAAATCCAACAGTTGAAACTATTTATAAATTTATTAGAGATATTTTTAAAGCCGAGAAAT
TAGATAGTGAATGTGCAATTATGTGTTTAGCTTATATTGAAAGAATAATAACGTATACTG
GTATTACATTAAGTTCAATTAATTGGAGAAGGATAGTTTTATCAGCATTAATTTTGGCAT
CAAAAGTTTGGGAAGATCAAAGTGTTTGGAATGTTGATTTCTTACCAGTATTCGATAATT
TAACAGCGGCCGATTTAAATTGTCTAGAGAGACAATTCCTTGCAATGTTACAATACAACG
TTAGTTTGAACGCTTCAATCTATGCAAAATACTATTTCGAGTTGAGAAATTTCTCAAAGT
TAGACTCCAATCAATTCCCTTTGAAACCGTTGGATAAATCTGGTGTTAGAAGATTGGAAG
ATCATTCAAAGGCTTCGGAATATAGAGTAAAACCATTTAAAAGAAGTGCTAGTGTNATCA
AATNATCCACCCGAAATTCATACAAGAGC
Length of connected seq. 1279
Full length Seq ID -
Full length Seq. -
Length of full length seq. -