SSF148
Library SS
(Link to library)
Clone ID SSF148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15745-1
Original site URL
Representative seq. ID SSF148Z
(Link to Original site)
Representative DNA sequence
>SSF148 (SSF148Q) /CSM/SS/SSF1-B/SSF148Q.Seq.d/
XXXXXXXXXXTTAAACTAATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTG
CTTACGACGAAGTCTTAGCTGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAG
GTAAAAACAAAATCGTCTTATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAG
NAATCAACCAACCATCTGAACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATG
AATCAAAACGTTCAAAATTCGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTG
CCAAAGCTAATGTCTCTGTCCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTG
TTGAAGTCCATTACACCGTCGCTGATGATCTCAATGAAGAAGAATTAATGACCAAAGTTC
GTAAATCAAGTGGTGCTGATTACTCTGGTAACAAATCAACCAACTAAACGTTACACGCAT
CTAAAAATGTATACATATTTTAAAAAAAAAAAAATTAAAAACAAAACAA
sequence update 1998. 6.17
Translated Amino Acid sequence
---*TNFTMADVSSTELKAAYDEVLADSNDTNWCLFKYEGKNKIVLSGKGSGGFAELAQX
INQPSERLYAYLRVVSGDDESKRSKFVFISWCGEEVGPLAKANVSVHKASVKQVIKNIGV
EVHYTVADDLNEEELMTKVRKSSGADYSGNKSTN*tlhasknvyif*kkkn*kqn


Translated Amino Acid sequence (All Frames)
Frame A:
---*TNFTMADVSSTELKAAYDEVLADSNDTNWCLFKYEGKNKIVLSGKGSGGFAELAQX
INQPSERLYAYLRVVSGDDESKRSKFVFISWCGEEVGPLAKANVSVHKASVKQVIKNIGV
EVHYTVADDLNEEELMTKVRKSSGADYSGNKSTN*tlhasknvyif*kkkn*kqn


Frame B:
---klisqwpmfppqn*kllttks*liqmiptgvysntkvktkssypvkvavvlln*pkx
stnhlnvymht*elylvmmnqnvqnsfsshgvvkklvplpklmslstklqsnkssktlvl
ksitpslmismkkn**pkfvnqvvlitlvtnqptkrythlkmytyfkkkkiknkt


Frame C:
---n*fhngrcflhriksclrrsls*fk*yqlvfiqirr*kqnrlir*r*rwfc*ispxn
qpti*tficilksciw***iktfkirfhlmvw*rswspcqs*clcpqsfsqtshqkhwc*
splhrr**sq*rrindqss*ikwc*llw*qinqlnvtri*kcihilkkkklktkq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK407 (VSK407Q) /CSM/VS/VSK4-A/VSK407Q.Seq.d/ 967 0.0
VSH509 (VSH509Q) /CSM/VS/VSH5-A/VSH509Q.Seq.d/ 967 0.0
VSA452 (VSA452Q) /CSM/VS/VSA4-C/VSA452Q.Seq.d/ 967 0.0
VFE866 (VFE866Q) /CSM/VF/VFE8-C/VFE866Q.Seq.d/ 967 0.0
SSM221 (SSM221Q) /CSM/SS/SSM2-A/SSM221Q.Seq.d/ 967 0.0
SSI114 (SSI114Q) /CSM/SS/SSI1-A/SSI114Q.Seq.d/ 967 0.0
SSG248 (SSG248Q) /CSM/SS/SSG2-B/SSG248Q.Seq.d/ 967 0.0
SSF333 (SSF333Q) /CSM/SS/SSF3-B/SSF333Q.Seq.d/ 967 0.0
SSF148 (SSF148Q) /CSM/SS/SSF1-B/SSF148Q.Seq.d/ 967 0.0
SLH816 (SLH816Q) /CSM/SL/SLH8-A/SLH816Q.Seq.d/ 967 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M92992|M92992.1 Dictyostelium discoideum cyclic AMP-regulated protein (p16) mRNA, complete cds. 965 0.0 1
X61797|X61797.1 Dictyostelium discoideum mRNA for p17, purified from actin-myosin complex. 952 0.0 2
U40160|U40160.1 Caenorhabditis elegans cosmid C56E10. 36 0.064 3
CC594013|CC594013.1 CH240_395P7.T7 CHORI-240 Bos taurus genomic clone CH240_395P7, genomic survey sequence. 46 0.50 1
AP006070|AP006070.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01. 42 0.72 6
AC139338|AC139338.3 Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 38 0.76 5
BB581086|BB581086.1 Mus musculus 15 days embryo embryonic body below diaphragm cDNA, RIKEN full-length enriched library, clone:8230402G17, 5' end partial sequence. 40 1.2 2
AJ013038|AJ013038.1 Entamoeba histolytica EST EhEST330. 44 2.0 1
AC109352|AC109352.3 Homo sapiens BAC clone RP11-489P20 from 4, complete sequence. 38 2.0 5
AP004491|AP004491.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjT17G08, TM0023. 40 3.1 4
dna update 2004. 2. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017342_92(AE017342|pid:none) Cryptococcus neoformans var. neof... 103 3e-21
AB080297_1(AB080297|pid:none) Marsupenaeus japonicus cArp-1 mRNA... 102 7e-21
AY122215_1(AY122215|pid:none) Drosophila melanogaster LP08941 fu... 100 4e-20
BC095818_1(BC095818|pid:none) Danio rerio zgc:112450, mRNA (cDNA... 93 5e-18
DQ443285_1(DQ443285|pid:none) Bombyx mori cyclic AMP-regulated p... 92 1e-17
BT081567_1(BT081567|pid:none) Rana catesbeiana clone rcat-evr-52... 88 1e-16
AB038364_1(AB038364|pid:none) Rattus norvegicus mRNA for SH3P7r4... 87 2e-16
AB039818_1(AB039818|pid:none) Rattus norvegicus mRNA for SH3P7r2... 87 2e-16
(Q9JHL4) RecName: Full=Drebrin-like protein; AltName: Full=SH3 d... 87 2e-16
AK153389_1(AK153389|pid:none) Mus musculus bone marrow macrophag... 87 2e-16
protein update 2009. 6.11
PSORT

psg: 0.75 gvh: 0.46 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: peroxisomal
4.0 %: mitochondrial

>> prediction for SSF148 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSF148Z
3' end seq.
>SSF148Z.Seq
----------TTAAACTAATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTG
CTTACGACGAAGTCTTAGCTGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAG
GTAAAAACAAAATCGTCTTATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAG
NAATCAACCAACCATCTGAACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATG
AATCAAAACGTTCAAAATTCGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTG
CCAAAGCTAATGTCTCTGTCCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTG
TTGAAGTCCATTACACCGTCGCTGATGATCTCAATGAAGAAGAATTAATGACCAAAGTTC
GTAAATCAAGTGGTGCTGATTACTCTGGTAACAAATCAACCAACTAAACGTTACACGCAT
CTAAAAATGTATACATATTTTAAAAAAAAAAAAATTAAAAACAAAACAA
Length of 3' end seq. 519
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -