>AFL239 (AFL239Q) /CSM/AF/AFL2-B/AFL239Q.Seq.d/
XXXXXXXXXXTNAAAATNATTTGAANNTGNACCAGNATTTTTTNCCAGTTAAAAAGAAAA
GAAGAAAGAAAAGAAGAAAGCCAAACNTTNNAAACATACATGTAGNCCATNTGANACCCT
TTTAATGGNTACTTAACAATTANAACCAAATTNAACTTTATATNCAAAACNAANTGATCC
AATTNCTTCATTAGGGACTTGGAAAAAAGTTTCAAAACAAATTNTTGCAGGTNATATGCA
ANCANCAGATCNAATTNAAAAANAAATTNAAGATGAACAAAAAAAAAGATTTCNAATTNC
CNAAAAGGAAAAAAANAA

---kxfexxpxffxs*kekkkekkkakxxkhtcxpxxtllmxt*QLXPNXTLYXKXXDPI
XSLGTWKKVSKQIXAGXMQXXDXIXKXIXDEQKKRFXIXXKEKX

Frame A:
---xnxlxxxqxfxpvkkkrrkkrrkpnxxnihvxhxxpf*wxlnnxnqixlyxqnxxiq
xlh*glgkkfqnkxlqvicxxqixxkxkxkmnkkkdfxxpkrkkx


Frame B:
---kxi*xxtxifxqlkrkeerkeesqtxxtym*xx*xpfngyltixtkxnfixktx*sn
xfirdleksfktnxcrxyaxxrsnxkxnxr*tkkkisnxxkgkkx


Frame C:
---kxfexxpxffxs*kekkkekkkakxxkhtcxpxxtllmxt*QLXPNXTLYXKXXDPI
XSLGTWKKVSKQIXAGXMQXXDXIXKXIXDEQKKRFXIXXKEKX

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL239 (AFL239Q) /CSM/AF/AFL2-B/AFL239Q.Seq.d/                        242   3e-63
CHB218 (CHB218Q) /CSM/CH/CHB2-A/CHB218Q.Seq.d/                        200   9e-51
VFM546 (VFM546Q) /CSM/VF/VFM5-B/VFM546Q.Seq.d/                        198   4e-50
VFL579 (VFL579Q) /CSM/VF/VFL5-D/VFL579Q.Seq.d/                        198   4e-50
VFF363 (VFF363Q) /CSM/VF/VFF3-C/VFF363Q.Seq.d/                        198   4e-50
SSL121 (SSL121Q) /CSM/SS/SSL1-A/SSL121Q.Seq.d/                        198   4e-50
SSH260 (SSH260Q) /CSM/SS/SSH2-C/SSH260Q.Seq.d/                        198   4e-50
SSG428 (SSG428Q) /CSM/SS/SSG4-B/SSG428Q.Seq.d/                        198   4e-50
SSF603 (SSF603Q) /CSM/SS/SSF6-A/SSF603Q.Seq.d/                        198   4e-50
SSA541 (SSA541Q) /CSM/SS/SSA5-B/SSA541Q.Seq.d/                        198   4e-50

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH728357|BH728357.1 BOMHA44TR BO_2_3_KB Brassica oleracea genomic clone BOMHA44,genomic survey sequence.    44   1.3    1
U41321|U41321.1 Brassica napus isocitrate lyase (ILA) gene, 5' flanking region.    44   1.3    1
I75072|I75072.1 Sequence 2 from patent US 5689040.                 44   1.3    1
AA183991|AA183991.1 ms53e03.r1 Life Tech mouse embryo 13 5dpc 10666014 Mus musculus cDNA clone IMAGE:615292 5', mRNA sequence.    32   1.5    2
AI448955|AI448955.1 ms53e03.x1 Life Tech mouse embryo 13 5dpc 10666014 Mus musculus cDNA clone IMAGE:615292 3', mRNA sequence.    32   1.5    2
AC128193|AC128193.3 Rattus norvegicus clone CH230-443G9, WORKING DRAFT SEQUENCE, 4 unordered pieces.    36   3.4    2
BX927230|BX927230.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42   5.1    1
CE835634|CE835634.1 tigr-gss-dog-17000332409376 Dog Library Canis familiaris genomic, genomic survey sequence.    42   5.1    1
AL953846|AL953846.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-244D10.    42   5.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RM1) RecName: Full=Oxysterol-binding protein 7; AltName: Ful...    89   6e-17

 psg: 0.72  gvh: 0.36  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for AFL239 is nuc

>AFL239Z.Seq
----------TNAAAATNATTTGAANNTGNACCAGNATTTTTTNCCAGTTAAAAAGAAAA
GAAGAAAGAAAAGAAGAAAGCCAAACNTTNNAAACATACATGTAGNCCATNTGANACCCT
TTTAATGGNTACTTAACAATTANAACCAAATTNAACTTTATATNCAAAACNAANTGATCC
AATTNCTTCATTAGGGACTTGGAAAAAAGTTTCAAAACAAATTNTTGCAGGTNATATGCA
ANCANCAGATCNAATTNAAAAANAAATTNAAGATGAACAAAAAAAAAGATTTCNAATTNC
CNAAAAGGAAAAAAANAA