>SSF143 (SSF143Q) /CSM/SS/SSF1-B/SSF143Q.Seq.d/
TAAAAATAAATAATTACTATGAAAGTTCTTGTTAAACAATTAATGAGTAAATCATTATTT
ACTATTAATTTAGATACAACTTTAGATGTTGCCTTAAAAAGTTTAAATGCCAATTCAATT
CATAGATTACCAGTAGTTGACAATGACGGTAATCTAAAAGGAATTATCACAGATAGAGAT
TTAAGATTAGCAACTGATTCACCATTTCTTCCAGAGAATAATGAAGATAGATTGGAAAAA
TTAAGACTTCACAAAGTTTCTTCTATTATGAAACAAAATCCAGTTACTATCGAAGATTTT
TCTCCAGTTGTAGAGGCAGCAAAATTAATGAGAGTTACAAATGTAGGAGGATTACCCGTA
TTAGATAAAAAAGGTCGTTTAATTGGAATGGTAACAAGATCTGACCTATTGGACTTATTA
ATTAAAGTTTTAGAGCCAGTACCACCACAAAGTTAAAAATAAGAAAAAAATAAAAAAAXX
XXXXXXXX

*k*IITMKVLVKQLMSKSLFTINLDTTLDVALKSLNANSIHRLPVVDNDGNLKGIITDRD
LRLATDSPFLPENNEDRLEKLRLHKVSSIMKQNPVTIEDFSPVVEAAKLMRVTNVGGLPV
LDKKGRLIGMVTRSDLLDLLIKVLEPVPPQS*k*eknkk---

Frame A:
*k*IITMKVLVKQLMSKSLFTINLDTTLDVALKSLNANSIHRLPVVDNDGNLKGIITDRD
LRLATDSPFLPENNEDRLEKLRLHKVSSIMKQNPVTIEDFSPVVEAAKLMRVTNVGGLPV
LDKKGRLIGMVTRSDLLDLLIKVLEPVPPQS*k*eknkk---


Frame B:
knk*ll*kfllnn**vnhyllli*iql*mlp*kv*mpiqfidyq*ltmtvi*kelsqiei
*d*qlihhffqrimkidwkn*dftkflll*nkiqllskiflql*rqqn**elqm*edypy
*ikkvv*lew*qdltywty*lkf*sqyhhkvknkkkik---


Frame C:
kinnyyessc*tine*iiiyy*frynfrcclkkfkcqfns*itss*q*r*skrnyhr*rf
kisn*ftissre**r*igkiktsqsffyyetkssyyrrffsscrgskinesykcrritri
r*krsfnwngnki*piglin*sfrastttklkirkk*k---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF143 (SSF143Q) /CSM/SS/SSF1-B/SSF143Q.Seq.d/                        900   0.0
SSK710 (SSK710Q) /CSM/SS/SSK7-A/SSK710Q.Seq.d/                        894   0.0
SSC856 (SSC856Q) /CSM/SS/SSC8-C/SSC856Q.Seq.d/                        894   0.0
VSF663 (VSF663Q) /CSM/VS/VSF6-C/VSF663Q.Seq.d/                        878   0.0
SSE203 (SSE203Q) /CSM/SS/SSE2-A/SSE203Q.Seq.d/                        854   0.0
SSL577 (SSL577Q) /CSM/SS/SSL5-D/SSL577Q.Seq.d/                        846   0.0
VSI609 (VSI609Q) /CSM/VS/VSI6-A/VSI609Q.Seq.d/                        835   0.0
SSD873 (SSD873Q) /CSM/SS/SSD8-D/SSD873Q.Seq.d/                        835   0.0
SSD251 (SSD251Q) /CSM/SS/SSD2-C/SSD251Q.Seq.d/                        607   e-173
SSD857 (SSD857Q) /CSM/SS/SSD8-C/SSD857Q.Seq.d/                        605   e-172

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE016955|AE016955.1 Enterococcus faecalis V583, section 9 of 11 of the complete genome.    34   0.004  12
AP003191|AP003191.2 Clostridium perfringens DNA, complete genome, section 7/10.    32   0.010  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   0.010  13
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    34   0.019  11
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             38   0.060  2
U67563|U67563.1 Methanococcus jannaschii section 105 of 150 of the complete genome.    38   0.077  2
BX323834|BX323834.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-48B5.    48   0.12   1
BX294006|BX294006.4 Zebrafish DNA sequence from clone CH211-145M1 in linkage group 8.    48   0.12   1
AC139946|AC139946.3 Rattus norvegicus clone CH230-88O20, WORKING DRAFT SEQUENCE, 43 unordered pieces.    40   0.14   3
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    32   0.14   9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CT009609_17(CT009609|pid:none) Desulfococcus multivorans vrl isl...    92   5e-18
CP000527_534(CP000527|pid:none) Desulfovibrio vulgaris subsp. vu...    92   8e-18
AE017285_2761(AE017285|pid:none) Desulfovibrio vulgaris subsp. v...    92   8e-18
CP001337_2564(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    90   3e-17
CP001087_2848(CP001087|pid:none) Desulfobacterium autotrophicum ...    89   7e-17
CP000702_1582(CP000702|pid:none) Thermotoga petrophila RKU-1, co...    87   3e-16
CP000916_1430(CP000916|pid:none) Thermotoga neapolitana DSM 4359...    85   1e-15
CP000141_173(CP000141|pid:none) Carboxydothermus hydrogenoforman...    85   1e-15
CP000804_3679(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    83   3e-15
CP000969_1644(CP000969|pid:none) Thermotoga sp. RQ2, complete ge...    83   4e-15

 psg: 0.76  gvh: 0.40  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSF143 is cyt

>SSF143F.Seq
TAAAAATAAATAATTACTATGAAAGTTCTTGTTAAACAATTAATGAGTAAATCATTATTT
ACTATTAATTTAGATACAACTTTAGATGTTGCCTTAAAAAGTTTAAATGCCAATTCAATT
CATAGATTACCAGTAGTTGACAATGACGGTAATCTAAAAGGAATTATCACAGATAGAGAT
TTAAGATTAGCAACTGATTCACCATTTCTTCCAGAGAATAATGAAGATAGATTGGAAAAA
TTAAGACTTCACAAAGTTTCTTCTATTATGAAACAAAATCCAGTTACTATCGAAGATTTT
TCTCCAGTTGTAGAGGCAGCAAAATTAATGAGAGTTACAAATGTAGGAGGATTACCCGTA
TTAGATAAAAAAGGTCGTTTAATTGGAATGGTAACAAGATCTGACCTATTGGACTTATTA
ATTAAAGTTTTAGAGCCAGTACCACCACAAAGTTAAAAATAAGAAAAAAATAAAAAAA