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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF136
Library SS
(Link to library)
Clone ID SSF136
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05079-1
Original site URL
Representative seq. ID SSF136F
(Link to Original site)
Representative DNA sequence 
>SSF136 (SSF136Q) /CSM/SS/SSF1-B/SSF136Q.Seq.d/
TATAAATAGATCTATTATAAAGAAATAATTATTTTTTTTTAAAAAAATGATGGAATTAGG
ATTTGAAAATGATATTGATTTATTAAATCAATATCAAACAATTCAATCAAGAAAAACAAA
AGATTATAAAAAGTTTTTAGAAATTAAACAAGAGAATAAGAATCAACATTTAGATATTAT
CTCATCATTTTGGGATGTAATTGTTATTACTGCTATTGATTCACTTCAAAAGGAATACTA
TGAGCAAGTATTAAAAGAAAAGATGAATCAAAATCAAATTCCATCATTTATACCTTACGT
TGTAATTTCTGATCCAGTTGGTGAAAAAATAGGTTGTGGTGGTTCAACCCTTTATGTTTT
AAAAACATTATCAACAATATTTGGTGATGATAAAATTAAAAATATGAAAATATTATTATT
ACATGCTGGTGGGTATAGTAAAAGATTACCAAATCATTCAACAACTGGTAAGATATTTGC
ATCAATACCATGTACACTTGGAATGGGTGGAAATAATAATAATAATAATGATGACGAAGA
TGAATCAAAATTACAAGCATGTTCAATGTTAGAAATTAAATTAATAATATTAATTGATAT
ACCAAAGAGAATGAAACCAGGTGTATTCTTAGCATGTTCAGATGATATTGAATTATTTGA
ATCAAATGAAATGTCTTXXXXXXXXXX
sequence update 1998.10. 1
Translated Amino Acid sequence 
inrsiikk*LFFFKKMMELGFENDIDLLNQYQTIQSRKTKDYKKFLEIKQENKNQHLDII
SSFWDVIVITAIDSLQKEYYEQVLKEKMNQNQIPSFIPYVVISDPVGEKIGCGGSTLYVL
KTLSTIFGDDKIKNMKILLLHAGGYSKRLPNHSTTGKIFASIPCTLGMGGNNNNNNDDED
ESKLQACSMLEIKLIILIDIPKRMKPGVFLACSDDIELFESNEMS---
Translated Amino Acid sequence (All Frames) 
Frame A:
yk*iyykeiiiff*kndgiri*k*y*fiksisnnsikknkrl*kvfrn*tre*estfryy
liilgcncyycy*ftskgil*asikrkdesksnsiiytlrcnf*ssw*knrlwwfnplcf
kniinniw***n*kyeniiitcwwv**kitksfnnw*dicintmytwngwk*******rr
*ikitsmfnvrn*innin*ytkenetrcilsmfr*y*ii*ik*nv---


Frame B:
inrsiikk*LFFFKKMMELGFENDIDLLNQYQTIQSRKTKDYKKFLEIKQENKNQHLDII
SSFWDVIVITAIDSLQKEYYEQVLKEKMNQNQIPSFIPYVVISDPVGEKIGCGGSTLYVL
KTLSTIFGDDKIKNMKILLLHAGGYSKRLPNHSTTGKIFASIPCTLGMGGNNNNNNDDED
ESKLQACSMLEIKLIILIDIPKRMKPGVFLACSDDIELFESNEMS---


Frame C:
*idll*rnnyfflkk*wn*dlkmiliy*inikqfnqekqkiiksf*klnkririni*ils
hhfgm*llllllihfkrntmsky*kkr*ikikfhhlyltl*fliqlvkk*vvvvqpfmf*
khyqqylvmiklki*kyyyymlvgivkdyqiiqqlvrylhqyhvhlewveiiiiimmtkm
nqnykhvqc*kln**y*liyqre*nqvys*hvqmilnylnqmkc---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF136 (SSF136Q) /CSM/SS/SSF1-B/SSF136Q.Seq.d/                        920   0.0
SSH416 (SSH416Q) /CSM/SS/SSH4-A/SSH416Q.Seq.d/                         46   7e-04
CHR241 (CHR241Q) /CSM/CH/CHR2-B/CHR241Q.Seq.d/                         46   7e-04
AFF486 (AFF486Q) /CSM/AF/AFF4-D/AFF486Q.Seq.d/                         46   7e-04
SSE576 (SSE576Q) /CSM/SS/SSE5-D/SSE576Q.Seq.d/                         42   0.011
SLI371 (SLI371Q) /CSM/SL/SLI3-C/SLI371Q.Seq.d/                         42   0.011
CHK493 (CHK493Q) /CSM/CH/CHK4-D/CHK493Q.Seq.d/                         42   0.011
AHJ818 (AHJ818Q) /CSM/AH/AHJ8-A/AHJ818Q.Seq.d/                         42   0.011
VSI507 (VSI507Q) /CSM/VS/VSI5-A/VSI507Q.Seq.d/                         40   0.043
VFH531 (VFH531Q) /CSM/VF/VFH5-B/VFH531Q.Seq.d/                         40   0.043
own update 2002.12.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   5e-16  20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   7e-13  24
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   1e-11  21
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    36   3e-09  17
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    36   4e-09  15
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    38   6e-09  18
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    34   6e-09  16
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   9e-09  18
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   9e-09  15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   1e-08  22
dna update 2004. 2. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC168244_1(BC168244|pid:none) Rattus norvegicus fucose-1-phospha...   132   1e-29
AJ276066_1(AJ276066|pid:none) Rattus norvegicus mRNA for putativ...   132   1e-29
BC110551_1(BC110551|pid:none) Mus musculus fucose-1-phosphate gu...   130   4e-29
AK028640_1(AK028640|pid:none) Mus musculus 10 days neonate skin ...   130   4e-29
AJ276067_1(AJ276067|pid:none) Mus musculus mRNA for putative GDP...   130   4e-29
BT045716_1(BT045716|pid:none) Salmo salar clone ssal-rgf-529-145...   130   5e-29
AF017445_1(AF017445|pid:none) Homo sapiens GDP-L-fucose pyrophos...   128   1e-28
BC155808_1(BC155808|pid:none) Danio rerio zgc:110694, mRNA (cDNA...   124   3e-27
BC095375_1(BC095375|pid:none) Danio rerio zgc:110694, mRNA (cDNA...   106   6e-22
CP001323_334(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    96   1e-18
protein update 2009. 6.11
PSORT 

 psg: 0.54  gvh: 0.33  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSF136 is nuc
5' end seq. ID SSF136F
5' end seq. 
>SSF136F.Seq
TATAAATAGATCTATTATAAAGAAATAATTATTTTTTTTTAAAAAAATGATGGAATTAGG
ATTTGAAAATGATATTGATTTATTAAATCAATATCAAACAATTCAATCAAGAAAAACAAA
AGATTATAAAAAGTTTTTAGAAATTAAACAAGAGAATAAGAATCAACATTTAGATATTAT
CTCATCATTTTGGGATGTAATTGTTATTACTGCTATTGATTCACTTCAAAAGGAATACTA
TGAGCAAGTATTAAAAGAAAAGATGAATCAAAATCAAATTCCATCATTTATACCTTACGT
TGTAATTTCTGATCCAGTTGGTGAAAAAATAGGTTGTGGTGGTTCAACCCTTTATGTTTT
AAAAACATTATCAACAATATTTGGTGATGATAAAATTAAAAATATGAAAATATTATTATT
ACATGCTGGTGGGTATAGTAAAAGATTACCAAATCATTCAACAACTGGTAAGATATTTGC
ATCAATACCATGTACACTTGGAATGGGTGGAAATAATAATAATAATAATGATGACGAAGA
TGAATCAAAATTACAAGCATGTTCAATGTTAGAAATTAAATTAATAATATTAATTGATAT
ACCAAAGAGAATGAAACCAGGTGTATTCTTAGCATGTTCAGATGATATTGAATTATTTGA
ATCAAATGAAATGTCTT----------
Length of 5' end seq. 677
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -