>SSF124 (SSF124Q) /CSM/SS/SSF1-A/SSF124Q.Seq.d/
XXXXXXXXXXTATTAAAAGGCACTGTAAATACAAATCCATCATCTTCTTCATCATCATCA
TCATCATCATCATCAGAACCAAAAACAGTCACTTGCCGTCATCTTTTAGTTAAACATCAA
GGTTCAAGAAATCCATCATCTTGGAGGGAATCTAAAATTACAAGAACCAAAGAAAGAGCA
ATCGCTAAACTTAATGAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGAT
TTAGCTCATAAAAATTCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTC
AAAAGAGGCCAAATGCAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAA
GTTAGTGGCATTGTAGATACTGATTCAGGTGTTCATATTATTGAAAGATTAGCATAAATA
GTAATAAATTATAATAGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAG
TTTATATTTATGTAAATCAATAAAAAAATATACATCCAAAGAAAAAA

---LKGTVNTNPSSSSSSSSSSSSEPKTVTCRHLLVKHQGSRNPSSWRESKITRTKERAI
AKLNEYRATIISGSATFEDLAHKNSDCSSAKRGGYLDPFKRGQMQRPFEDCAFSLKVGEV
SGIVDTDSGVHIIERLA*ivinynsiyiffnieslfil*fifm*inkkiyiqrk

Frame A:
---ikrhckyksiiffiiiiiiiirtknshlpssfs*tsrfkksiilegi*nyknqrksn
r*t**i*snnyiwfchi*rfss*kfrl*qc*krwls*siqkrpnaktf*rlriffksw*s
*whcry*frcsyy*kisinsnkl**yiyif*y*itvysivyiyvnq*knihpkkk


Frame B:
---LKGTVNTNPSSSSSSSSSSSSEPKTVTCRHLLVKHQGSRNPSSWRESKITRTKERAI
AKLNEYRATIISGSATFEDLAHKNSDCSSAKRGGYLDPFKRGQMQRPFEDCAFSLKVGEV
SGIVDTDSGVHIIERLA*ivinynsiyiffnieslfil*fifm*inkkiyiqrk


Frame C:
---*kal*iqihhllhhhhhhhhqnqkqslavif*lnikvqeihhlggnlklqepkkeqs
lnlmnieqqlylvlphlki*likiqivavlkevailihskeakckdllkiahfl*klvkl
val*iliqvfillkd*hk***iiivyiyflilnhclfyslylcksikkytskek

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF124 (SSF124Q) /CSM/SS/SSF1-A/SSF124Q.Seq.d/                        676   0.0
SSA808 (SSA808Q) /CSM/SS/SSA8-A/SSA808Q.Seq.d/                        676   0.0
SSI193 (SSI193Q) /CSM/SS/SSI1-D/SSI193Q.Seq.d/                        660   0.0
SSD494 (SSD494Q) /CSM/SS/SSD4-D/SSD494Q.Seq.d/                        617   e-176
VHJ605 (VHJ605Q) /CSM/VH/VHJ6-A/VHJ605Q.Seq.d/                        444   e-124
SLB374 (SLB374Q) /CSM/SL/SLB3-D/SLB374Q.Seq.d/                         38   0.13
VHK659 (VHK659Q) /CSM/VH/VHK6-C/VHK659Q.Seq.d/                         36   0.52
VHC803 (VHC803Q) /CSM/VH/VHC8-A/VHC803Q.Seq.d/                         36   0.52
SHH439 (SHH439Q) /CSM/SH/SHH4-B/SHH439Q.Seq.d/                         36   0.52
VHP715 (VHP715Q) /CSM/VH/VHP7-A/VHP715Q.Seq.d/                         34   2.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U78757|U78757.1 Dictyostelium discoideum PinA (pinA) mRNA, partial cds.   676   0.0    3
AX926716|AX926716.1 Sequence 6 from Patent WO03084989.             42   0.008  5
BJ221516|BJ221516.1 Triticum aestivum cDNA clone:wh25i17, 3' end, single read.    32   0.35   2
CD872352|CD872352.1 AZO2.120H01R010405 AZO2 Triticum aestivum cDNA clone AZO2120H01, mRNA sequence.    32   0.35   2
CD894333|CD894333.1 G118.126A09F010823 G118 Triticum aestivum cDNA clone G118126A09, mRNA sequence.    32   0.35   2
CA701946|CA701946.1 wkm2c.pk006.p21 wkm2c Triticum aestivum cDNA clone wkm2c.pk006.p21 5' end, mRNA sequence.    32   0.36   2
BE190190|BE190190.1 so08f11.y1 Gm-c1035 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1035-2758 5' similar to TR:P90527 P90527 PINA ;, mRNA sequence.    46   0.50   1
BI971073|BI971073.1 GM830012A20G07 Gm-r1083 Glycine max cDNA clone Gm-r1083-4526 3', mRNA sequence.    46   0.50   1
CD409701|CD409701.1 Gm_ck36847 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    46   0.50   1
CA953317|CA953317.1 sav55c04.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-7016 5' similar to TR:P90527 P90527 PINA ;, mRNA sequence.    46   0.50   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78757_1(U78757|pid:none) Dictyostelium discoideum PinA (pinA) m...   244   7e-64
DQ311303_1(DQ311303|pid:none) Bombyx mori rotamase Pin1 mRNA, co...   145   8e-34
(P54353) RecName: Full=Protein dodo;  &AE014298_3237(AE014298|pi...   138   7e-32
AF017777_3(AF017777|pid:none) Drosophila melanogaster tweety (tt...   138   7e-32
AY888683_1(AY888683|pid:none) Synthetic construct Homo sapiens c...   134   2e-30
BT076892_1(BT076892|pid:none) Caligus rogercresseyi clone crog-e...   134   2e-30
AY813618_1(AY813618|pid:none) Schistosoma japonicum SJCHGC06702 ...   134   2e-30
(Q4R383) RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-...   134   2e-30
(Q5BIN5) RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-...   134   2e-30
AK139395_1(AK139395|pid:none) Mus musculus 10 days neonate corte...   132   5e-30

 psg: 0.80  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 32.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SSF124 is mit

>SSF124Z.Seq
----------TATTAAAAGGCACTGTAAATACAAATCCATCATCTTCTTCATCATCATCA
TCATCATCATCATCAGAACCAAAAACAGTCACTTGCCGTCATCTTTTAGTTAAACATCAA
GGTTCAAGAAATCCATCATCTTGGAGGGAATCTAAAATTACAAGAACCAAAGAAAGAGCA
ATCGCTAAACTTAATGAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGAT
TTAGCTCATAAAAATTCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTC
AAAAGAGGCCAAATGCAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAA
GTTAGTGGCATTGTAGATACTGATTCAGGTGTTCATATTATTGAAAGATTAGCATAAATA
GTAATAAATTATAATAGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAG
TTTATATTTATGTAAATCAATAAAAAAATATACATCCAAAGAAAAAA