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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL237
Library AF
(Link to library)
Clone ID AFL237
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16317-1
Original site URL
Representative seq. ID AFL237P
(Link to Original site)
Representative DNA sequence 
>AFL237 (AFL237Q) /CSM/AF/AFL2-B/AFL237Q.Seq.d/
ATTTTTTTAAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGT
ATTCATATTAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAA
TTTACAACCAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAAT
TTTAGTGAACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATT
ATCAGACTATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGC
ACCACAACAAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACA
ACGTCAACCACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAA
CAATCCTGAAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTT
AAGTAAAGATATGAAATTCCTTACTCACTTTGTAGAACAAATCAAAGAACAACGTCGTAT
TCAAGAATTGGCATTAAAAGATCCATATGGTGAAGAGTATCAAAAATTAGCTTATCAACA
TATTCAACAACAAAATATTGAAAAAAATATGCAACATGCTATGGXXXXXXXXXXGAATGT
TCAATTAATGGACATCCATTAAAAGCTTTTGTAGATACAGGTGCCCAACAATNTATTATG
TNTGAAAAATGTGCCGAAAGATGNGAAATTTCAAGAATTATTGATANTAGATTTCATGGT
ATTGCTAAAGGTGTGGGTACATCAAAAATTATAGGTAGAGTTCATAGTACAGACTTAAAA
CTTGGCAACTCTTTATTCTCTGTATCATTATCTATCCTTCAAAATCAAGATGTTGACTTC
ATCCTTGGTTTGGATATGTTAAAGCGTCATCAAGTCATTTTGGATTTAAATAGAGGTGTA
TTACAAATTGCAAATGAAAAGATTGAATTCCTTCATGAAAAAGATTTAAAGGAGATTTTA
AATAAAGAACAAAATGATTTAGAAGAAGATACTAAAAAAGCANCTGCTAATAGTCTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ff*th*HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTI
LVNNQVLTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQ
RQPQRDPLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVEQIKEQRRI
QELALKDPYGEEYQKLAYQHIQQQNIEKNMQHAM---

---ECSINGHPLKAFVDTGAQQXIMXEKCAERXEISRIIDXRFHGIAKGVGTSKIIGRVH
STDLKLGNSLFSVSLSILQNQDVDFILGLDMLKRHQVILDLNRGVLQIANEKIEFLHEKD
LKEILNKEQNDLEEDTKKAXANSL
Translated Amino Acid sequence (All Frames) 
Frame A:
iflntlthk*ylsiyphtqsihingrnnnin*k*kfhsskfttrsns*rskt*sri*nhn
fseqssfnt*wksir**keiirlfn*rw*flidnkkcfkstttkitttpttttttttttt
tsttkrssqfttryfrplykqs*rlnssykfkssiskcnlk*ryeipyslcrtnqrttsy
srigikrsiw*rvskislstysttky*kkyatcy---

---ECSINGHPLKAFVDTGAQQXIMXEKCAERXEISRIIDXRFHGIAKGVGTSKIIGRVH
STDLKLGNSLFSVSLSILQNQDVDFILGLDMLKRHQVILDLNRGVLQIANEKIEFLHEKD
LKEILNKEQNDLEEDTKKAXANSL

Frame B:
ff*th*HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTI
LVNNQVLTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQ
RQPQRDPLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVEQIKEQRRI
QELALKDPYGEEYQKLAYQHIQQQNIEKNMQHAM---

---nvqlmdih*kll*iqvpnnxlcxknvpkdxkfqellixdfmvllkvwvhqkl*vefi
vqt*nlatlyslyhylsfkikmltsslvwic*sviksfwi*ievyyklqmkrlnsfmkki
*rrf*iknkmi*kkilkkxlliv

Frame C:
ffkhtnt*iifiylsthpkysy*wqk*qyqlkmkisfk*iynqikqlki*nve*nlkpqf
**tikf*hlmeky*imkrnyqtiqlkvvisy**qkmf*ehhnkdhnnpnnhnnhnnhnnn
vnhkeilsihhkif*ttlqtilkt*lkl*iqiqh*qmqs*vki*nslltl*nksknnvvf
knwh*kihmvksikn*linifnnkilkkicnmlw---

---mfn*wtsiksfcryrcptxyyv*kmcrkmxnfkny*x*iswyc*rcgyiknyr*ss*
yrlktwqlfilciiiypsksrc*lhpwfgyvkassshfgfk*rcitnck*kd*ips*krf
kgdfk*rtk*frrry*ksxc**s
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL237 (AFL237Q) /CSM/AF/AFL2-B/AFL237Q.Seq.d/                       1265   0.0
CFI315 (CFI315Q) /CSM/CF/CFI3-A/CFI315Q.Seq.d/                        809   0.0
AFJ488 (AFJ488Q) /CSM/AF/AFJ4-D/AFJ488Q.Seq.d/                        737   0.0
AFJ439 (AFJ439Q) /CSM/AF/AFJ4-B/AFJ439Q.Seq.d/                        728   0.0
AFM815 (AFM815Q) /CSM/AF/AFM8-A/AFM815Q.Seq.d/                        708   0.0
VFE196 (VFE196Q) /CSM/VF/VFE1-D/VFE196Q.Seq.d/                        698   0.0
SFL211 (SFL211Q) /CSM/SF/SFL2-A/SFL211Q.Seq.d/                        698   0.0
AFO325 (AFO325Q) /CSM/AF/AFO3-B/AFO325Q.Seq.d/                        688   0.0
CHA120 (CHA120Q) /CSM/CH/CHA1-A/CHA120Q.Seq.d/                        682   0.0
CHD380 (CHD380Q) /CSM/CH/CHD3-D/CHD380Q.Seq.d/                        680   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of the complete genome.    34   6e-08  18
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   2e-05  25
AC149162|AC149162.2 Xenopus tropicalis clone ISB-362P17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   6e-05  2
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   2e-04  21
BX572091|BX572091.1 Prochlorococcus marinus MED4 complete genome; segment 2/5.    34   3e-04  14
AL732385|AL732385.3 Leptosphaeria maculans : genomic region surrounding the avirulence  gene AvrLm1; putative centromeric or peri-centromeric region clone  J53 of strain v23.1.3 of Mat- Leptosphaeria maculans from France.    42   4e-04  5
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   7e-04  16
AE015943|AE015943.1 Clostridium tetani E88, section 8 of 10 of the complete genome.    32   0.001  14
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    30   0.006  17
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    36   0.007  11
dna update 2004. 8. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JB0) RecName: Full=Protein DDI1 homolog;                          319   e-152
AK067974_1(AK067974|pid:none) Oryza sativa Japonica Group cDNA c...   101   7e-36
DQ311262_1(DQ311262|pid:none) Bombyx mori DNA-damage inducible p...   110   2e-35
(A0JPP7) RecName: Full=Protein DDI1 homolog 1;  &BC127531_1(BC12...   108   4e-33
(Q5TDH0) RecName: Full=Protein DDI1 homolog 2;  &AK293006_1(AK29...   110   3e-32
(Q9DAF3) RecName: Full=Protein DDI1 homolog 1;  &AK005882_1(AK00...   107   9e-32
(Q6TH22) RecName: Full=Protein DDI1 homolog 2;  &AY398334_1(AY39...   111   2e-31
(Q6CFI3) RecName: Full=DNA damage-inducible protein 1;  &CR38212...   114   3e-31
(Q2T9Z1) RecName: Full=Protein DDI1 homolog 1;  &BC111200_1(BC11...   108   5e-31
(Q7ZYA7) RecName: Full=Protein DDI1 homolog 2;  &BC043869_1(BC04...   106   6e-31
protein update 2009. 4.25
PSORT 

 psg: 0.83  gvh: 0.33  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane

>> prediction for AFL237 is cyt
5' end seq. ID AFL237F
5' end seq. 
>AFL237F.Seq
ATTTTTTTAAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGT
ATTCATATTAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAA
TTTACAACCAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAAT
TTTAGTGAACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATT
ATCAGACTATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGC
ACCACAACAAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACA
ACGTCAACCACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAA
CAATCCTGAAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTT
AAGTAAAGATATGAAATTCCTTACTCACTTTGTAGAACAAATCAAAGAACAACGTCGTAT
TCAAGAATTGGCATTAAAAGATCCATATGGTGAAGAGTATCAAAAATTAGCTTATCAACA
TATTCAACAACAAAATATTGAAAAAAATATGCAACATGCTATGG----------
Length of 5' end seq. 644
3' end seq. ID AFL237Z
3' end seq. 
>AFL237Z.Seq
----------GAATGTTCAATTAATGGACATCCATTAAAAGCTTTTGTAGATACAGGTGC
CCAACAATNTATTATGTNTGAAAAATGTGCCGAAAGATGNGAAATTTCAAGAATTATTGA
TANTAGATTTCATGGTATTGCTAAAGGTGTGGGTACATCAAAAATTATAGGTAGAGTTCA
TAGTACAGACTTAAAACTTGGCAACTCTTTATTCTCTGTATCATTATCTATCCTTCAAAA
TCAAGATGTTGACTTCATCCTTGGTTTGGATATGTTAAAGCGTCATCAAGTCATTTTGGA
TTTAAATAGAGGTGTATTACAAATTGCAAATGAAAAGATTGAATTCCTTCATGAAAAAGA
TTTAAAGGAGATTTTAAATAAAGAACAAAATGATTTAGAAGAAGATACTAAAAAAGCANC
TGCTAATAGTCTT
Length of 3' end seq. 423
Connected seq. ID AFL237P
Connected seq. 
>AFL237P.Seq
ATTTTTTTAAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGT
ATTCATATTAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAA
TTTACAACCAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAAT
TTTAGTGAACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATT
ATCAGACTATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGC
ACCACAACAAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACA
ACGTCAACCACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAA
CAATCCTGAAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTT
AAGTAAAGATATGAAATTCCTTACTCACTTTGTAGAACAAATCAAAGAACAACGTCGTAT
TCAAGAATTGGCATTAAAAGATCCATATGGTGAAGAGTATCAAAAATTAGCTTATCAACA
TATTCAACAACAAAATATTGAAAAAAATATGCAACATGCTATGG----------GAATGT
TCAATTAATGGACATCCATTAAAAGCTTTTGTAGATACAGGTGCCCAACAATNTATTATG
TNTGAAAAATGTGCCGAAAGATGNGAAATTTCAAGAATTATTGATANTAGATTTCATGGT
ATTGCTAAAGGTGTGGGTACATCAAAAATTATAGGTAGAGTTCATAGTACAGACTTAAAA
CTTGGCAACTCTTTATTCTCTGTATCATTATCTATCCTTCAAAATCAAGATGTTGACTTC
ATCCTTGGTTTGGATATGTTAAAGCGTCATCAAGTCATTTTGGATTTAAATAGAGGTGTA
TTACAAATTGCAAATGAAAAGATTGAATTCCTTCATGAAAAAGATTTAAAGGAGATTTTA
AATAAAGAACAAAATGATTTAGAAGAAGATACTAAAAAAGCANCTGCTAATAGTCTT
Length of connected seq. 1067
Full length Seq ID -
Full length Seq. -
Length of full length seq. -