>SSF112 (SSF112Q) /CSM/SS/SSF1-A/SSF112Q.Seq.d/
AATGACACTTTTTTCATCAATCTCATCAATTTCAAGTCCAATGACAAGTTCAAAATCCAG
TATTGCCTCGTTTGGTAGTGGGACAAGTATGGGTTCTAATTCAATTGCATGTGGTGGCGG
TTGTGGTGGAGGAAGTGGAAGTATTCTTGGATTAGGTTTAGGTCTAGGATTAGATTTAAC
TGGAGGTTCTAGATCAAGCGGTGCTTGTGGTAGTAATCGTGGATCTGGTAATCGTGGCCA
TGGTCATGGTCATGGAAGTATGGGTGGAGGAAATGGTTCATGTTGTGGTATTTAAAATTT
TTATAATTATAAAATTTATGTTCAAAATAATTATTTTTGTAATATTACTTTATTTAAAAT
AAAATCATCTGTGAAGATATTAGTTAAATTAAAA

MTLFSSISSISSPMTSSKSSIASFGSGTSMGSNSIACGGGCGGGSGSILGLGLGLGLDLT
GGSRSSGACGSNRGSGNRGHGHGHGSMGGGNGSCCGI*nfynykiyvqnnyfcnitlfki
kssvkilvklk

Frame A:
ndtffinlinfksndkfkiqyclvw*wdkygf*fncmwwrlwwrkwkyswirfrsrirfn
wrf*ikrclw**swiw*swpwswswkygwrkwfmlwylkfl*l*nlcsk*lfl*yyfi*n
kiicedis*ik


Frame B:
MTLFSSISSISSPMTSSKSSIASFGSGTSMGSNSIACGGGCGGGSGSILGLGLGLGLDLT
GGSRSSGACGSNRGSGNRGHGHGHGSMGGGNGSCCGI*nfynykiyvqnnyfcnitlfki
kssvkilvklk


Frame C:
*hffhqshqfqvq*qvqnpvlprlvvgqvwvliqlhvvavvveevevfld*v*v*d*i*l
evldqavlvvvivdlvivamvmvmevwveemvhvvvfkifiiikfmfkiiifvillylk*
nhl*ry*ln*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF112 (SSF112Q) /CSM/SS/SSF1-A/SSF112Q.Seq.d/                        571   e-162
CHN185 (CHN185Q) /CSM/CH/CHN1-D/CHN185Q.Seq.d/                        266   2e-70
SFE868 (SFE868Q) /CSM/SF/SFE8-C/SFE868Q.Seq.d/                        260   1e-68
SSF218 (SSF218Q) /CSM/SS/SSF2-A/SSF218Q.Seq.d/                        248   5e-65
SSE272 (SSE272Q) /CSM/SS/SSE2-C/SSE272Q.Seq.d/                        234   8e-61
SSE216 (SSE216Q) /CSM/SS/SSE2-A/SSE216Q.Seq.d/                        222   3e-57
SSE255 (SSE255Q) /CSM/SS/SSE2-C/SSE255Q.Seq.d/                        208   5e-53
SSC164 (SSC164Q) /CSM/SS/SSC1-C/SSC164Q.Seq.d/                        202   3e-51
SHH782 (SHH782Q) /CSM/SH/SHH7-D/SHH782Q.Seq.d/                        202   3e-51
SSF137 (SSF137Q) /CSM/SS/SSF1-B/SSF137Q.Seq.d/                        161   1e-38

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X16827|X16827.1 Dictyostelium discoideum 2C mRNA.                129  2e-31  2
U67552|U67552.1 Methanococcus jannaschii section 94 of 150 of the complete genome.    46  0.011  2
AC097639|AC097639.2 Homo sapiens chromosome 3 clone RP11-384L8, complete sequence.    44  0.28  3
AR271569|AR271569.1 Sequence 1 from patent US 6503729.            46  0.32  1
AL751170|AL751170.1 Pinus pinaster root EST, clone RS05H03 similar to  CADMIUM-TRANSPORTING ATPASE.    44  1.3  1
AI460440|AI460440.1 sa81e11.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-5733 5' similar to SW:VSPA_SOYBN P15490 STEM 28 KD GLYCOPROTEIN PRECURSOR ;, mRNA sequence.    44  1.3  1
AL139104|AL139104.3 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP3-454M10.    44  1.3  1
BG726947|BG726947.1 sae29c02.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-4323 5' similar to TR:O49855 O49855 ACID PHOSPHATASE. ;, mRNA sequence.    44  1.3  1
BU091184|BU091184.1 st77g08.y1 Gm-c1054 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1054-687 5' similar to TR:O49855 O49855 ACID PHOSPHATASE. ;, mRNA sequence.    44  1.3  1
BE331581|BE331581.1 sp15g08.y1 Gm-c1042 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1042-663 5' similar to TR:O49855 O49855 ACID PHOSPHATASE. ;, mRNA sequence.    44  1.3  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD...    49   5e-05
BT042207_1(BT042207|pid:none) Zea mays full-length cDNA clone ZM...    41   0.011
BT061735_1(BT061735|pid:none) Zea mays full-length cDNA clone ZM...    41   0.011
CP001096_1143(CP001096|pid:none) Rhodopseudomonas palustris TIE-...    41   0.011
BT069618_1(BT069618|pid:none) Zea mays full-length cDNA clone ZM...    41   0.015
(P04929) Histidine-rich glycoprotein precursor.  &KGZQHL(A22692)...    41   0.015
AL844508_233(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.025
AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.025
DQ375824_1(DQ375824|pid:none) Drosophila melanogaster isolate 33...    40   0.033
DQ375818_1(DQ375818|pid:none) Drosophila melanogaster isolate 11...    40   0.033

 psg: 0.92  gvh: 0.54  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.50  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for SSF112 is cyt

>SSF112E.Seq
AATGACACTTTTTTCATCAATCTCATCAATTTCAAGTCCAATGACAAGTTCAAAATCCAG
TATTGCCTCGTTTGGTAGTGGGACAAGTATGGGTTCTAATTCAATTGCATGTGGTGGCGG
TTGTGGTGGAGGAAGTGGAAGTATTCTTGGATTAGGTTTAGGTCTAGGATTAGATTTAAC
TGGAGGTTCTAGATCAAGCGGTGCTTGTGGTAGTAATCGTGGATCTGGTAATCGTGGCCA
TGGTCATGGTCATGGAAGTATGGGTGGAGGAAATGGTTCATGTTGTGGTATTTAAAATTT
TTATAATTATAAAATTTATGTTCAAAATAATTATTTTTGTAATATTACTTTATTTAAAAT
AAAATCATCTGTGAAGATATTAGTTAAATTAAAA