SSF108
Library SS
(Link to library)
Clone ID SSF108
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID SSF108Z
(Link to Original site)
Representative DNA sequence
>SSF108 (SSF108Q) /CSM/SS/SSF1-A/SSF108Q.Seq.d/
XXXXXXXXXXAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGT
TGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGG
AAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCT
TTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAA
CAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAA
GGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACC
AGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGT
TGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAA
AAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGATAATACATCTTTCAT
CTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTT
AAATAATAAAATTATGAATTTCAGAAATTAA
sequence update 1997.10.21
Translated Amino Acid sequence
---FNNGDKWNDKFMSCLVGSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLS
KFQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPD
SEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQDDNTSFIF
NLNSEK*nnmffflfkktlnnkimnfrn*


Translated Amino Acid sequence (All Frames)
Frame A:
---dstmvingminschvwlvqmldvtfgsimklilqlqensknwlkavqtmi*pq*mvf
qssksyqelfngqlmlklstkliqllvhmk*pllhtklirllakmvmtlfncqfqnllhq
ilkllai*qfvkhihhmtml*mevftlntpqqlaklqllkkmrhsqri*llhkmiihlss
lt*tlknkticfffslrkl*iikl*isei


Frame B:
---iqqw**me**ihvmfgwfkc*m*hlga**n*ysnsrkiprigsrqykq*fnlnkwsf
kvpsltrsfsmgs*c*ncqqs*fncwfi*ndhysips**gclqrw**lcsiansktystr
f*nc*pfnsssntyti*lcckwkcll*ilpnnwpsysy*kr*dipkeydcytr**yifhl
*lkl*kikqyvffsl*enfk**nyefqkl


Frame C:
---FNNGDKWNDKFMSCLVGSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLS
KFQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPD
SEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQDDNTSFIF
NLNSEK*nnmffflfkktlnnkimnfrn*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK494 (SSK494Q) /CSM/SS/SSK4-D/SSK494Q.Seq.d/ 1178 0.0
SSI186 (SSI186Q) /CSM/SS/SSI1-D/SSI186Q.Seq.d/ 1178 0.0
SSG844 (SSG844Q) /CSM/SS/SSG8-B/SSG844Q.Seq.d/ 1178 0.0
SSF771 (SSF771Q) /CSM/SS/SSF7-C/SSF771Q.Seq.d/ 1178 0.0
SSF496 (SSF496Q) /CSM/SS/SSF4-D/SSF496Q.Seq.d/ 1178 0.0
SSF108 (SSF108Q) /CSM/SS/SSF1-A/SSF108Q.Seq.d/ 1178 0.0
SSC587 (SSC587Q) /CSM/SS/SSC5-D/SSC587Q.Seq.d/ 1178 0.0
SSJ652 (SSJ652Q) /CSM/SS/SSJ6-C/SSJ652Q.Seq.d/ 1170 0.0
SSE517 (SSE517Q) /CSM/SS/SSE5-A/SSE517Q.Seq.d/ 1170 0.0
SSF409 (SSF409Q) /CSM/SS/SSF4-A/SSF409Q.Seq.d/ 1166 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds. 1100 0.0 1
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds. 969 0.0 3
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds. 628 0.0 4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 0.002 12
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3. 32 0.032 12
AC112392|AC112392.7 Rattus norvegicus clone CH230-173O12, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces. 36 0.059 6
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 0.071 10
AL844173|AL844173.2 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-82L15. 38 0.088 2
AF411804|AF411804.1 Lycopersicon esculentum BAC clone Clemson_ID 47I13, complete sequence. 34 0.088 7
AL109836|AL109836.27 Human DNA sequence from clone RP11-243C2 on chromosome Xq27.1-28 Contains STSs and GSSs. 38 0.092 2
dna update 2004. 2. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ... 383 e-105
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k... 344 1e-93
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso... 96 8e-19
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a... 58 3e-07
BX571864_113(BX571864|pid:none) Photorhabdus luminescens subsp. ... 54 3e-06
(A4YIG5) RecName: Full=Cysteinyl-tRNA synthetase; EC=6.... 34 3.0
CU207366_3569(CU207366|pid:none) Gramella forsetii KT0803 comple... 34 3.9
BA000026_784(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 33 5.1
CP000685_4711(CP000685|pid:none) Flavobacterium johnsoniae UW101... 33 6.6
BA000026_783(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 33 8.6
protein update 2009. 1.29
PSORT

psg: 0.93 gvh: 0.46 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSF108 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSF108Z
3' end seq.
>SSF108Z.Seq
----------AGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGT
TGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGG
AAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCT
TTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAA
CAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAA
GGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACC
AGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGT
TGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAA
AAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGATAATACATCTTTCAT
CTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTT
AAATAATAAAATTATGAATTTCAGAAATTAA
Length of 3' end seq. 621
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -