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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE882
Library SS
(Link to library)
Clone ID SSE882
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SSE882Z
(Link to Original site)
Representative DNA sequence 
>SSE882 (SSE882Q) /CSM/SS/SSE8-D/SSE882Q.Seq.d/
XXXXXXXXXXCCAACAGAATGTGAAGCATGTCAAATTGTTATTGGTTATGTTGAAAATTT
GGTATTACATAGTAATAAAACTCAAGGTGAAATTGAAAAAGAACTTGATAAATTGTGTAA
TATGGTTTCTCCACGTTATAAACCAACATGTGATAGCATTGTTTCTGTATACACAACTGA
AATTATACAATTAATTTTAAATAAAGAAACACCGGATTTAATTTGTAAAGAGATAAAAGT
ATGTACAACTGAATGGGAAATTAATACAACAAAATTATTTTCAAAAATTACTGAAATTGC
CATGAAAGAAATTCATTCAGTAGCTCAAAAATCAAAATCACATCAATTAACTCAAAATAA
TTTAAGATCTACAAGTGAGTGTGAAATTTGTCAAGTATTTGTTAGTAAATTGGAATCATA
TATTTCAACAAATAAATCACAAGAAGAAATAATGGAAGAATTAGATAATGCCTGTGATTA
TATGAAGAGTTTTGAACAACAATGTAAACAAATGGTTCAAGATTATGTCCCAGAATTAAT
TGAAATCATGTCCACTACTGAAGACCCTAATAAAGTTTGTTCCCAAATTTCCTTATGTCC
AAATGACCTATCTTCTAAAAATGAATCAAAAAATCAAAGACTTTTAAAAAAAAACATAAT
CAATTAATAAATTATTAATTTCTAATTTCTGAAACA
sequence update 1997.10.21
Translated Amino Acid sequence 
---TECEACQIVIGYVENLVLHSNKTQGEIEKELDKLCNMVSPRYKPTCDSIVSVYTTEI
IQLILNKETPDLICKEIKVCTTEWEINTTKLFSKITEIAMKEIHSVAQKSKSHQLTQNNL
RSTSECEICQVFVSKLESYISTNKSQEEIMEELDNACDYMKSFEQQCKQMVQDYVPELIE
IMSTTEDPNKVCSQISLCPNDLSSKNESKNQRLLKKNIIN**iinf*flk
Translated Amino Acid sequence (All Frames) 
Frame A:
---qqnvkhvklllvmlkiwyyiviklkvklkknlincviwflhvinqhvialflytqlk
lyn*f*ikkhri*fvkr*kyvqlngkliqqnyfqkllklp*kkfiq*lknqnhin*lkii
*dlqvsvkfvkyllvnwnhifqqinhkkk*wkn*impvii*rvlnnnvnkwfkimsqn*l
kscpllktlikfvpkfpyvqmtyllkmnqkikdf*kkt*sinkllisnf*n


Frame B:
---nrm*smsncywlc*kfgit***nsr*n*krt**iv*ygfstl*tnm**hcfcihn*n
ytinfk*rntgfnl*rdksmyn*mgn*ynkiifkny*nchernsfssskikitsinsk*f
kiyk*v*nlssic**igiiyfnk*itrrnngrir*cl*lyeef*ttm*tngsrlcprin*
nhvhy*rp**slfpnflmsk*pif*k*ikksktfkkkhnqliny*fliset


Frame C:
---TECEACQIVIGYVENLVLHSNKTQGEIEKELDKLCNMVSPRYKPTCDSIVSVYTTEI
IQLILNKETPDLICKEIKVCTTEWEINTTKLFSKITEIAMKEIHSVAQKSKSHQLTQNNL
RSTSECEICQVFVSKLESYISTNKSQEEIMEELDNACDYMKSFEQQCKQMVQDYVPELIE
IMSTTEDPNKVCSQISLCPNDLSSKNESKNQRLLKKNIIN**iinf*flk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE882 (SSE882Q) /CSM/SS/SSE8-D/SSE882Q.Seq.d/                       1306   0.0
SSE760 (SSE760Q) /CSM/SS/SSE7-C/SSE760Q.Seq.d/                       1265   0.0
CHG343 (CHG343Q) /CSM/CH/CHG3-B/CHG343Q.Seq.d/                       1265   0.0
SSL531 (SSL531Q) /CSM/SS/SSL5-B/SSL531Q.Seq.d/                       1142   0.0
SSF545 (SSF545Q) /CSM/SS/SSF5-B/SSF545Q.Seq.d/                       1136   0.0
SSD258 (SSD258Q) /CSM/SS/SSD2-C/SSD258Q.Seq.d/                       1120   0.0
SSF304 (SSF304Q) /CSM/SS/SSF3-A/SSF304Q.Seq.d/                       1112   0.0
SSL895 (SSL895Q) /CSM/SS/SSL8-D/SSL895Q.Seq.d/                       1100   0.0
SSA866 (SSA866Q) /CSM/SS/SSA8-C/SSA866Q.Seq.d/                        987   0.0
SSC184 (SSC184Q) /CSM/SS/SSC1-D/SSC184Q.Seq.d/                        938   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    36   3e-08  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-07  20
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   7e-07  14
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.             36   1e-06  15
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    36   1e-06  21
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34   3e-06  11
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34   3e-06  18
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   5e-06  13
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   5e-06  18
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    36   8e-06  17
dna update 2004. 2. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v...    99   9e-20
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (...    99   9e-20
CR861454_1(CR861454|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1...    99   9e-20
M60258_1(M60258|pid:none) Human mutant cerebroside sulfate activ...    99   9e-20
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains:   Rec...    99   9e-20
M60257_1(M60257|pid:none) Human mutant cerebroside sulfate activ...    99   9e-20
X57108_1(X57108|pid:none) Human gene for cerebroside sulfate act...    99   9e-20
AY892719_1(AY892719|pid:none) Synthetic construct Homo sapiens c...    99   9e-20
CR861144_1(CR861144|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1...    99   2e-19
AK299184_1(AK299184|pid:none) Homo sapiens cDNA FLJ54136 complet...    98   3e-19
protein update 2009. 6.11
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSE882 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSE882Z
3' end seq. 
>SSE882Z.Seq
----------CCAACAGAATGTGAAGCATGTCAAATTGTTATTGGTTATGTTGAAAATTT
GGTATTACATAGTAATAAAACTCAAGGTGAAATTGAAAAAGAACTTGATAAATTGTGTAA
TATGGTTTCTCCACGTTATAAACCAACATGTGATAGCATTGTTTCTGTATACACAACTGA
AATTATACAATTAATTTTAAATAAAGAAACACCGGATTTAATTTGTAAAGAGATAAAAGT
ATGTACAACTGAATGGGAAATTAATACAACAAAATTATTTTCAAAAATTACTGAAATTGC
CATGAAAGAAATTCATTCAGTAGCTCAAAAATCAAAATCACATCAATTAACTCAAAATAA
TTTAAGATCTACAAGTGAGTGTGAAATTTGTCAAGTATTTGTTAGTAAATTGGAATCATA
TATTTCAACAAATAAATCACAAGAAGAAATAATGGAAGAATTAGATAATGCCTGTGATTA
TATGAAGAGTTTTGAACAACAATGTAAACAAATGGTTCAAGATTATGTCCCAGAATTAAT
TGAAATCATGTCCACTACTGAAGACCCTAATAAAGTTTGTTCCCAAATTTCCTTATGTCC
AAATGACCTATCTTCTAAAAATGAATCAAAAAATCAAAGACTTTTAAAAAAAAACATAAT
CAATTAATAAATTATTAATTTCTAATTTCTGAAACA
Length of 3' end seq. 686
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -