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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE820
Library SS
(Link to library)
Clone ID SSE820
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID SSE820E
(Link to Original site)
Representative DNA sequence 
>SSE820 (SSE820Q) /CSM/SS/SSE8-A/SSE820Q.Seq.d/
CACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATNCGGTACCAGATATGG
TGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTNCCTACACCTG
TTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGG
TTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGT
TAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAA
AATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATACTTGTAT
TACAGTTTATTATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 4. 6
Translated Amino Acid sequence 
TMAKRTKKVGVVGKXGTRYGASLRKQVKKMEITQHGXYTCSFCGKDAVRRSSVGIWKCNG
CRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkyi*ntci
tvyyflkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hngqknkesrscr*xryqiwcffkkas*kdgnhptrxlhlfilw*rcrqtfirwylem*r
lp*sfswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*iylkyly
ysllffkkkkkkkkkkkkk


Frame B:
TMAKRTKKVGVVGKXGTRYGASLRKQVKKMEITQHGXYTCSFCGKDAVRRSSVGIWKCNG
CRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkyi*ntci
tvyyflkkkkkkkkkkkkk


Frame C:
qwpkeqrkselsvnxvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtv
avkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*kinifkilvl
qfiif*kkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/                        632   0.0
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/                        632   0.0
VSI243 (VSI243Q) /CSM/VS/VSI2-B/VSI243Q.Seq.d/                        632   0.0
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/                        632   0.0
VSH330 (VSH330Q) /CSM/VS/VSH3-B/VSH330Q.Seq.d/                        632   0.0
VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/                        632   0.0
VSF596 (VSF596Q) /CSM/VS/VSF5-D/VSF596Q.Seq.d/                        632   0.0
VSF225 (VSF225Q) /CSM/VS/VSF2-B/VSF225Q.Seq.d/                        632   0.0
VSE566 (VSE566Q) /CSM/VS/VSE5-C/VSE566Q.Seq.d/                        632   0.0
VSE459 (VSE459Q) /CSM/VS/VSE4-C/VSE459Q.Seq.d/                        632   0.0
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  3e-13  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  3e-13  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  3e-13  2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  3e-13  2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  3e-13  2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  3e-13  2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  4e-13  2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  8e-12  2
BM027100|BM027100.1 GIT0000389 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence.    78  1e-10  1
BU275473|BU275473.1 Cr_Emb_02A04_TEXF1 Convoluta roscoffensis embryos from Eva Jiminez Convoluta roscoffensis cDNA clone Cr_Emb_02A04 5' similar to E1266102 SEQUENCE 47 FROM PATENT WO9723633. unidentified, mRNA sequence.    62  3e-09  2
dna update 2003. 8.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   158   6e-38
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   126   2e-28
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   125   4e-28
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   125   5e-28
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...   124   1e-27
EU139237_1(EU139237|pid:none) Flustra foliacea putative 60S ribo...   123   2e-27
AM049133_1(AM049133|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   123   2e-27
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   123   2e-27
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   123   2e-27
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   122   3e-27
protein update 2009. 7. 7
PSORT 

 psg: 0.78  gvh: 0.34  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 28.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar

>> prediction for SSE820 is cyt
5' end seq. ID SSE820F
5' end seq. 
>SSE820F.Seq
CACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGG
TGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTG
TTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGG
TTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGT
TAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAA
AATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATACTTGTAT
TACAGTTTATTATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 5' end seq. 419
3' end seq. ID SSE820Z
3' end seq. 
>SSE820Z.Seq
----------GTTGTCGGTAAATCCGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGT
TAAAAAGATGGAAATCACCCAACACGGTCCCTACACCTGTTCATTCTGTGGTAAAGATGC
CGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGG
TGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCT
CAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATAC
ACTGGTTTTAAAAAATAAATATATTTAAAATACTTGTATTACAGTTTATTATTTTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 388
Connected seq. ID SSE820P
Connected seq. 
>SSE820P.Seq
CACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGG
TGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTG
TTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGG
TTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGT
TAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAA
AATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATACTTGTAT
TACAGTTTATTATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-
---------GTTGTCGGTAAATCCGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTT
AAAAAGATGGAAATCACCCAACACGGTCCCTACACCTGTTCATTCTGTGGTAAAGATGCC
GTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGT
GGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTC
AGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATACA
CTGGTTTTAAAAAATAAATATATTTAAAATACTTGTATTACAGTTTATTATTTTTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 807
Full length Seq ID SSE820E
Full length Seq. 
>SSE820E.Seq
CACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATNCGGTACCAGATATGG
TGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTNCCTACACCTG
TTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGG
TTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGT
TAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAA
AATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATACTTGTAT
TACAGTTTATTATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 419