>SSE805 (SSE805Q) /CSM/SS/SSE8-A/SSE805Q.Seq.d/
CAAAGAAGAACCAGGAGTTAACGGTGAAGCTCCAGTAAAGGATGAACACATCAATCTTAA
AGTTAAAAACCAAGGCGGTGGTGAAGTATTTTTCAAAATCAAGAGATCAACACCTTTAAA
GAAATTAATGGAAGCATATTGTCAAAGACAAGGTCTTAACTATGCAAGTTGTCGTTTCTT
ATTTGATGGTGTTCGTGTCAAAGAAGACGCCACACCAAATCAATTAGGTATGGAGAATGA
AGATGTTTTAGATTGTGCATTAATGCAAACTGGTGGTTCTTTCTAAATAGAATTTGTTTG
AAATAACTTAGTGGTGTATTTAAAAAATAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAGG
AAGAAAA

KEEPGVNGEAPVKDEHINLKVKNQGGGEVFFKIKRSTPLKKLMEAYCQRQGLNYASCRFL
FDGVRVKEDATPNQLGMENEDVLDCALMQTGGSF*iefv*nnlvvylknkkkkkerkkeg
rk

Frame A:
qrrtrs*r*ssskg*thqs*s*kprrw*sifqnqeintfkeingsilsktrs*lcklsfl
i*wcscqrrrhtksiryge*rcfrlcinanwwfflnriclk*lsgvfkk*kkkkrkkerr
kk


Frame B:
KEEPGVNGEAPVKDEHINLKVKNQGGGEVFFKIKRSTPLKKLMEAYCQRQGLNYASCRFL
FDGVRVKEDATPNQLGMENEDVLDCALMQTGGSF*iefv*nnlvvylknkkkkkerkkeg
rk


Frame C:
kknqeltvklq*rmntsilklktkavvkyfsksrdqhl*rn*wkhivkdkvltmqvvvsy
lmvfvskktphqin*vwrmkmf*ivh*cklvvlsk*nlfeit*wci*kikkkkkkerkke
e

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI741 (VSI741Q) /CSM/VS/VSI7-B/VSI741Q.Seq.d/                        636   0.0
VSG273 (VSG273Q) /CSM/VS/VSG2-D/VSG273Q.Seq.d/                        636   0.0
VSF321 (VSF321Q) /CSM/VS/VSF3-A/VSF321Q.Seq.d/                        636   0.0
SSE805 (SSE805Q) /CSM/SS/SSE8-A/SSE805Q.Seq.d/                        636   0.0
SSE480 (SSE480Q) /CSM/SS/SSE4-D/SSE480Q.Seq.d/                        636   0.0
SSM219 (SSM219Q) /CSM/SS/SSM2-A/SSM219Q.Seq.d/                        628   e-179
VSA840 (VSA840Q) /CSM/VS/VSA8-B/VSA840Q.Seq.d/                        613   e-175
SSJ172 (SSJ172Q) /CSM/SS/SSJ1-C/SSJ172Q.Seq.d/                        605   e-172
SSB796 (SSB796Q) /CSM/SS/SSB7-D/SSB796Q.Seq.d/                        603   e-172
SSC109 (SSC109Q) /CSM/SS/SSC1-A/SSC109Q.Seq.d/                        585   e-166

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF446008|AF446008.1 Dictyostelium discoideum small ubiquitin-like protein (SUMO) mRNA, complete cds.   567  e-158  1
AC127682|AC127682.2 Mus musculus chromosome UNK clone RP24-170O17, WORKING DRAFT SEQUENCE, 9 unordered pieces.    48  0.008  2
CD797984|CD797984.1 EST 14365 Ripe Grape (harvested at 5 p.m.) Pedicles Lambda Triplex2 Library Vitis vinifera cDNA clone P3CH05RP007C10 3', mRNA sequence.    38  0.022  2
CD711158|CD711158.1 VVA029A07_402845 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVA029A07 3, mRNA sequence.    38  0.025  2
BQ798604|BQ798604.1 EST 773 Green Grape berries Lambda Zap II Library Vitis vinifera cDNA clone GB006A10 3', mRNA sequence.    38  0.026  2
BQ798639|BQ798639.1 EST 808 Green Grape berries Lambda Zap II Library Vitis vinifera cDNA clone GB006E06 3', mRNA sequence.    38  0.026  2
BQ798629|BQ798629.1 EST 798 Green Grape berries Lambda Zap II Library Vitis vinifera cDNA clone GB006D07 3', mRNA sequence.    38  0.026  2
BQ799996|BQ799996.1 EST 2165 Green Grape berries Lambda Zap II Library Vitis vinifera cDNA clone GT204F02 3', mRNA sequence.    38  0.026  2
BQ799789|BQ799789.1 EST 1958 Green Grape berries Lambda Zap II Library Vitis vinifera cDNA clone GT194H06 3', mRNA sequence.    38  0.026  2
AC106201|AC106201.4 Rattus norvegicus clone CH230-20G6, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38  0.027  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF446008_1(AF446008|pid:none) Dictyostelium discoideum small ubi...   196   2e-49
AY251810_1(AY251810|pid:none) Bigelowiella natans small ubiquiti...   104   1e-21
AL844504_57(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...   102   4e-21
FB794920_1(FB794920|pid:none) Sequence 14193 from Patent WO20080...   100   3e-20
FB794894_1(FB794894|pid:none) Sequence 14167 from Patent WO20080...   100   3e-20
EU862552_1(EU862552|pid:none) Nicotiana benthamiana isolate Z2.3...   100   3e-20
CR940347_185(CR940347|pid:none) Theileria annulata strain Ankara...    99   5e-20
AK062434_1(AK062434|pid:none) Oryza sativa Japonica Group cDNA c...    99   5e-20
CT005247_48(CT005247|pid:none) Leishmania major strain Friedlin,...    99   6e-20
FB794918_1(FB794918|pid:none) Sequence 14191 from Patent WO20080...    98   8e-20

 psg: 0.75  gvh: 0.29  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSE805 is nuc

>SSE805E.Seq
CAAAGAAGAACCAGGAGTTAACGGTGAAGCTCCAGTAAAGGATGAACACATCAATCTTAA
AGTTAAAAACCAAGGCGGTGGTGAAGTATTTTTCAAAATCAAGAGATCAACACCTTTAAA
GAAATTAATGGAAGCATATTGTCAAAGACAAGGTCTTAACTATGCAAGTTGTCGTTTCTT
ATTTGATGGTGTTCGTGTCAAAGAAGACGCCACACCAAATCAATTAGGTATGGAGAATGA
AGATGTTTTAGATTGTGCATTAATGCAAACTGGTGGTTCTTTCTAAATAGAATTTGTTTG
AAATAACTTAGTGGTGTATTTAAAAAATAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAGG
AAGAAAA