>SSE763 (SSE763Q) /CSM/SS/SSE7-C/SSE763Q.Seq.d/
XXXXXXXXXXTATAAAGGTGTTTGTTTAGTAGAACATAAAATTGCAAATGGTAATTTTAT
TGATTTAGCAAGAAGACTTATCACAAAGATTCCACCAACAAGTAAAAAGATTTACACATC
AGAGAATCATAATTTTCACTATATTTCAGAGAATGATTTAGCGTTTTTATGTTTATGTCA
CGAGAAATTAGGAGTTCAAATACCATCAGAATTTTTATCAGATATTAGACAACAATTCAT
TCGTTCATATGGACAATCATTTTCTCAAAATTCACCAACAGCTACATACGACCCATTCAT
TAGAGTTTTAGAGGAACGTATGAAATATTACTCAAATCCAAAATCGAACAAAATGAATTT
AGTTATGGATCAAGTATCAGAAGCTAAAGGTGCTTTAACTGATGCTATAGAAAAGACAAT
TCACAGAGGTGAAAAGATTGAAATTATTGTAGATAAAACTGAAAGACTTCAATCAGAATC
ATTTGTTTTTAAAAGTAACTCTGTTGCTTTAAAAAGAAAACTTTGGTGGCAAAATAAAAA
ATTAGCAATTGCAATTGGTTTAGTTGTTTGTATTTTAATTGCTGTAATTACCCTTGCTCT
CTTAAAATATTTCAAAGTAATTTAAATAAATCCCTATCAAAACTTTTACACTGGAAATCA
AAAAAAAAAAAAAAAAAGACTTTTTATAGAAAAAATAAAAAAATAAAATTTC

---KGVCLVEHKIANGNFIDLARRLITKIPPTSKKIYTSENHNFHYISENDLAFLCLCHE
KLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDPFIRVLEERMKYYSNPKSNKMNLV
MDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKKL
AIAIGLVVCILIAVITLALLKYFKVI*inpyqnfytgnqkkkkkrlfiekikk*nf

Frame A:
---ikvfv**niklqmvilli*qedlsqrfhqqvkrfthqriiiftifqrmi*rfyvyvt
rn*efkyhqnfyqildnnsfvhmdnhflkihqqlhtthslef*rnv*nitqiqnrtk*i*
lwikyqklkvl*lml*krqftevkrlkll*iklkdfnqnhlflkvtlll*kenfggkikn
*qlqlv*lfvf*ll*lplls*nisk*fk*ipiktftleikkkkkkdfl*kk*knki


Frame B:
---*rclfsrt*nckw*fy*fskktyhkdstnk*kdlhires*fslyfre*fsvfmfmsr
eirssntirifiry*ttihsfiwtiifskftnsyirpih*sfrgtyeillkskieqnefs
ygssirs*rcfn*cyrkdnsqr*kd*nycr*n*ktsiriicf*k*lccfkkktlvak*ki
sncnwfsclyfnccnypcslkifqsnlnkslskllhwkskkkkkktfyrknkkikf


Frame C:
---KGVCLVEHKIANGNFIDLARRLITKIPPTSKKIYTSENHNFHYISENDLAFLCLCHE
KLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDPFIRVLEERMKYYSNPKSNKMNLV
MDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKKL
AIAIGLVVCILIAVITLALLKYFKVI*inpyqnfytgnqkkkkkrlfiekikk*nf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI250 (SSI250Q) /CSM/SS/SSI2-C/SSI250Q.Seq.d/                       1287   0.0
SSE763 (SSE763Q) /CSM/SS/SSE7-C/SSE763Q.Seq.d/                       1287   0.0
SSM672 (SSM672Q) /CSM/SS/SSM6-C/SSM672Q.Seq.d/                       1166   0.0
SSH201 (SSH201Q) /CSM/SS/SSH2-A/SSH201Q.Seq.d/                        856   0.0
SSG758 (SSG758Q) /CSM/SS/SSG7-C/SSG758Q.Seq.d/                        236   4e-61
VSK122 (VSK122Q) /CSM/VS/VSK1-A/VSK122Q.Seq.d/                         38   0.18
VSG133 (VSG133Q) /CSM/VS/VSG1-B/VSG133Q.Seq.d/                         38   0.18
SSL579 (SSL579Q) /CSM/SS/SSL5-D/SSL579Q.Seq.d/                         38   0.18
SSK754 (SSK754Q) /CSM/SS/SSK7-C/SSK754Q.Seq.d/                         38   0.18
VSJ747 (VSJ747Q) /CSM/VS/VSJ7-B/VSJ747Q.Seq.d/                         36   0.70

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2of the complete genome.    38   2e-04  13
AL954832|AL954832.12 Zebrafish DNA sequence from clone DKEY-15O4.    34   0.003  11
AP000829|AP000829.4 Homo sapiens genomic DNA, chromosome 18p clone:RP11-732L14, complete sequences.    32   0.004  13
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   0.004  14
AL928948|AL928948.4 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-281L5.    38   0.005  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.006  16
U02970|U02970.1 Prototheca wickerhamii 263-11 complete mitochondrial DNA.    32   0.011  7
AC131242|AC131242.2 Mus musculus clone RP23-39K21, WORKING DRAFT SEQUENCE, 6 unordered pieces.    36   0.013  11
AL132862|AL132862.1 Caenorhabditis elegans YAC Y73F8A.             38   0.014  14
BX572092|BX572092.1 Prochlorococcus marinus MED4 complete genome; segment 3/5.    42   0.015  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NW7) RecName: Full=Vesicle-associated membrane protein 7A;        406   e-112
(Q86AQ7) RecName: Full=Vesicle-associated membrane protein 7B;  ...   135   2e-30
AK060093_1(AK060093|pid:none) Oryza sativa Japonica Group cDNA c...   127   3e-28
EU964925_1(EU964925|pid:none) Zea mays clone 282584 vesicle-asso...   127   3e-28
EF147419_1(EF147419|pid:none) Populus trichocarpa clone WS01230_...   127   4e-28
GM754336_1(GM754336|pid:none) Sequence 29 from Patent WO20081168...   126   6e-28
(Q9LFP1) RecName: Full=Vesicle-associated membrane protein 713; ...   125   1e-27
AM467632_1(AM467632|pid:none) Vitis vinifera contig VV78X147447....   125   2e-27
(Q9MAS5) RecName: Full=Putative vesicle-associated membrane prot...   125   2e-27
EF087886_1(EF087886|pid:none) Picea sitchensis clone WS02915_P10...   124   3e-27

 psg: 0.69  gvh: 0.53  alm: 0.10  top: 0.33  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: nuclear
	 20.0 %: vesicles of secretory system
	 16.0 %: cytoplasmic
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSE763 is nuc

>SSE763Z.Seq
----------TATAAAGGTGTTTGTTTAGTAGAACATAAAATTGCAAATGGTAATTTTAT
TGATTTAGCAAGAAGACTTATCACAAAGATTCCACCAACAAGTAAAAAGATTTACACATC
AGAGAATCATAATTTTCACTATATTTCAGAGAATGATTTAGCGTTTTTATGTTTATGTCA
CGAGAAATTAGGAGTTCAAATACCATCAGAATTTTTATCAGATATTAGACAACAATTCAT
TCGTTCATATGGACAATCATTTTCTCAAAATTCACCAACAGCTACATACGACCCATTCAT
TAGAGTTTTAGAGGAACGTATGAAATATTACTCAAATCCAAAATCGAACAAAATGAATTT
AGTTATGGATCAAGTATCAGAAGCTAAAGGTGCTTTAACTGATGCTATAGAAAAGACAAT
TCACAGAGGTGAAAAGATTGAAATTATTGTAGATAAAACTGAAAGACTTCAATCAGAATC
ATTTGTTTTTAAAAGTAACTCTGTTGCTTTAAAAAGAAAACTTTGGTGGCAAAATAAAAA
ATTAGCAATTGCAATTGGTTTAGTTGTTTGTATTTTAATTGCTGTAATTACCCTTGCTCT
CTTAAAATATTTCAAAGTAATTTAAATAAATCCCTATCAAAACTTTTACACTGGAAATCA
AAAAAAAAAAAAAAAAAGACTTTTTATAGAAAAAATAAAAAAATAAAATTTC