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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE754
Library SS
(Link to library)
Clone ID SSE754
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11967-1
Original site URL
Representative seq. ID SSE754Z
(Link to Original site)
Representative DNA sequence 
>SSE754 (SSE754Q) /CSM/SS/SSE7-C/SSE754Q.Seq.d/
XXXXXXXXXXGAATATATTTAAGATTAATGGATCACCATCAGAGGAGAACCATACCTTTT
CAATGGCGACTTTGTGGATAGGGGTAGTTTTAGTTTTGAAATTATCATCACTCTATTGGC
TTATAAATTATTGTACCCAAATCATATGCATTTGACAAGGGGTAACCATGAGACAACCGA
TATGAATCGTTTCTATGGTTTCCAAGGCGAAGTGGTTGCAAAATACAGTGAGATGGTATT
CGATCTATTCTCAGAGTTGTTCAATTGGTTCCCATTGGCATTCGTGTTGGATGAATCGTT
TATGGTGGTACATGGTGGTTTGTTTGGTAAGGATGGTGTCACACTTGACGATATTAGAAA
GATTAAACGTAATGCACCAGATCCAAAAGATAATGAATTGGTTCAATGCTTACTTTGGTC
TGATCCTCAATCAAATCCTGGTATTGCTCCTTCTTCAAGAGGTGTAGGTGTTTACTTTGG
ACCTGATGTCACCAGACGTTTCCTCAAGGAAAATAATCTATCAACTATCATTAGATCTCA
TGAAGTTAAAGAAAAAGGTTATCAAATCGATGATGATGGTTCTCTCATCACTGTTTTCTC
TGCTCCAAATTATTGTGATCAATCTGGTAATCTTGGCTCATTTATAAATATAACTGAAGA
TAAAATTAAAATTACAACTTTTGAAGCTGTTGAACATCCGAATATACCACCAATGCATTA
TGCCAAAAAATATTTCTA
sequence update 1997.10.13
Translated Amino Acid sequence 
---yi*d*WITIRGEPYLFNGDFVDRGSFSFEIIITLLAYKLLYPNHMHLTRGNHETTDM
NRFYGFQGEVVAKYSEMVFDLFSELFNWFPLAFVLDESFMVVHGGLFGKDGVTLDDIRKI
KRNAPDPKDNELVQCLLWSDPQSNPGIAPSSRGVGVYFGPDVTRRFLKENNLSTIIRSHE
VKEKGYQIDDDGSLITVFSAPNYCDQSGNLGSFINITEDKIKITTFEAVEHPNIPPMHYA
KKYF
Translated Amino Acid sequence (All Frames) 
Frame A:
---nifkingspseenhtfsmatlwigvvlvlklsslywlinyctqiici*qgvtmrqpi
*ivsmvskakwlqntvrwysiysqscsigshwhscwmnrlwwymvvclvrmvshltiler
lnvmhqiqkimnwfnayfglilnqilvllllqev*vftldlmspdvssrkiiyqlsldlm
klkkkviksmmmvlsslfsllqiivinlvilahl*i*lkiklklqllkllniriyhqcim
pknis


Frame B:
---iylrlmdhhqrrtipfqwrlcg*g*f*f*nyhhsigl*iivpksyafdkg*p*dnry
esflwfprrsgckiq*dgirsilrvvqlvpigirvg*ivyggtwwfvw*gwcht*ry*kd
*t*ctrskr**igsmltlv*ssikswycsffkrcrcllwt*chqtfpqgk*sinyh*is*
s*rkrlsnr**wfshhcflcskll*siw*swliykyn*r*n*nynf*sc*tseyttnalc
qkifl


Frame C:
---yi*d*WITIRGEPYLFNGDFVDRGSFSFEIIITLLAYKLLYPNHMHLTRGNHETTDM
NRFYGFQGEVVAKYSEMVFDLFSELFNWFPLAFVLDESFMVVHGGLFGKDGVTLDDIRKI
KRNAPDPKDNELVQCLLWSDPQSNPGIAPSSRGVGVYFGPDVTRRFLKENNLSTIIRSHE
VKEKGYQIDDDGSLITVFSAPNYCDQSGNLGSFINITEDKIKITTFEAVEHPNIPPMHYA
KKYF
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE754 (SSE754Q) /CSM/SS/SSE7-C/SSE754Q.Seq.d/                       1443   0.0
VFI734 (VFI734Q) /CSM/VF/VFI7-B/VFI734Q.Seq.d/                       1366   0.0
VFF491 (VFF491Q) /CSM/VF/VFF4-D/VFF491Q.Seq.d/                       1366   0.0
CFC823 (CFC823Q) /CSM/CF/CFC8-A/CFC823Q.Seq.d/                       1352   0.0
AFO461 (AFO461Q) /CSM/AF/AFO4-C/AFO461Q.Seq.d/                       1350   0.0
AFL662 (AFL662Q) /CSM/AF/AFL6-C/AFL662Q.Seq.d/                       1344   0.0
SFG624 (SFG624Q) /CSM/SF/SFG6-A/SFG624Q.Seq.d/                       1342   0.0
SFD165 (SFD165Q) /CSM/SF/SFD1-C/SFD165Q.Seq.d/                       1330   0.0
VFE321 (VFE321Q) /CSM/VF/VFE3-A/VFE321Q.Seq.d/                       1310   0.0
AFA128 (AFA128Q) /CSM/AF/AFA1-B/AFA128Q.Seq.d/                       1308   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BF272976|BF272976.1 GA__Eb0016H03f Gossypium arboreum 7-10 dpa fiber library Gossypiumarboreum cDNA clone GA__Eb0016H03f, mRNA sequence.    48   3e-06  2
CA933944|CA933944.1 MTU3TS.P14.F11 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence.    54   3e-06  2
CB821514|CB821514.1 EST 2365 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone be002m12 3', mRNA sequence.    60   5e-05  1
BU041737|BU041737.1 PP_LEa0010F03f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0010F03f, mRNA sequence.    60   5e-05  1
BQ916199|BQ916199.1 QHB17B15.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB17B15, mRNA sequence.    58   2e-04  1
AJ561748|AJ561748.1 Cryptosporidium parvum GSS, PAC clone pica_0004_g07, T7 end  sequence.    34   0.002  3
BU895987|BU895987.1 X033H08 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    54   0.003  1
CK097096|CK097096.1 UB38BPH04.3pR Populus active cambium cDNA library Populus tremula cDNA clone UB38BPH04 3', mRNA sequence.    54   0.003  1
BU822525|BU822525.1 UB38BPH04 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence.    54   0.003  1
AC105093|AC105093.1 Homo sapiens chromosome 18 clone RP11-1081A18 map 18, LOW-PASS SEQUENCE SAMPLING.    40   0.004  5
dna update 2004. 2. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR848198_1(CR848198|pid:none) Xenopus tropicalis finished cDNA, ...   280   1e-74
BC080162_1(BC080162|pid:none) Xenopus tropicalis ppp5c protein, ...   280   1e-74
(Q84K11) RecName: Full=Serine/threonine protein phosphatase 5;  ...   276   7e-74
CR859667_1(CR859667|pid:none) Pongo abelii mRNA; cDNA DKFZp459E1...   276   1e-73
CP001323_193(CP001323|pid:none) Micromonas sp. RCC299 chromosome...   277   1e-73
(P53041) RecName: Full=Serine/threonine-protein phosphatase 5;  ...   276   1e-73
AK223222_1(AK223222|pid:none) Homo sapiens mRNA for protein phos...   276   1e-73
AK293402_1(AK293402|pid:none) Homo sapiens cDNA FLJ55048 complet...   276   1e-73
AK297095_1(AK297095|pid:none) Homo sapiens cDNA FLJ55717 complet...   276   1e-73
AM448299_4(AM448299|pid:none) Vitis vinifera contig VV78X055639....   273   4e-73
protein update 2009. 6.11
PSORT 

 psg: 0.72  gvh: 0.41  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSE754 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSE754Z
3' end seq. 
>SSE754Z.Seq
----------GAATATATTTAAGATTAATGGATCACCATCAGAGGAGAACCATACCTTTT
CAATGGCGACTTTGTGGATAGGGGTAGTTTTAGTTTTGAAATTATCATCACTCTATTGGC
TTATAAATTATTGTACCCAAATCATATGCATTTGACAAGGGGTAACCATGAGACAACCGA
TATGAATCGTTTCTATGGTTTCCAAGGCGAAGTGGTTGCAAAATACAGTGAGATGGTATT
CGATCTATTCTCAGAGTTGTTCAATTGGTTCCCATTGGCATTCGTGTTGGATGAATCGTT
TATGGTGGTACATGGTGGTTTGTTTGGTAAGGATGGTGTCACACTTGACGATATTAGAAA
GATTAAACGTAATGCACCAGATCCAAAAGATAATGAATTGGTTCAATGCTTACTTTGGTC
TGATCCTCAATCAAATCCTGGTATTGCTCCTTCTTCAAGAGGTGTAGGTGTTTACTTTGG
ACCTGATGTCACCAGACGTTTCCTCAAGGAAAATAATCTATCAACTATCATTAGATCTCA
TGAAGTTAAAGAAAAAGGTTATCAAATCGATGATGATGGTTCTCTCATCACTGTTTTCTC
TGCTCCAAATTATTGTGATCAATCTGGTAATCTTGGCTCATTTATAAATATAACTGAAGA
TAAAATTAAAATTACAACTTTTGAAGCTGTTGAACATCCGAATATACCACCAATGCATTA
TGCCAAAAAATATTTCTA
Length of 3' end seq. 728
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -