>SSE728 (SSE728Q) /CSM/SS/SSE7-B/SSE728Q.Seq.d/
XXXXXXXXXXGAAAAAGATGGCCACAATTACAAATGCAGACCCATATAAAATATTATTTG
AACAAGATATAAAAACAGCAACCAATATTCCAATGGTTACATTCATTTCAAATGTTGAAG
AATTTGTTAAAGATAAAGATGTTGAAAATGTTTTCAAACAATTACAAGAAGCATATCAAA
AATATAAATTTTTTGAATCAAAACTTTCAAATAATATTTCAATGTTAACTCAAAGATCAA
AACAATTACAAGAATCTTTAGATATTGTCGATCATGTTGAAAATAAATCTAATGAATCAT
TTTCAGTACAATATGAACTTTCAGAAGGTGTTTACTCTTCAGCACAAGTAAATGAACCAA
AATCAATTTATTTATGGTTAGGTGCAAATGTAATGTTGGAATATTCATTTGAAGAAGCAA
GAGAGGTATTAAGAAAGAATAAAGATACAGTCGATCGTCAACTTAGTGAGAGCATTCAAG
ATTTAGGTTTTGTAAAGGATCAAATCACTACAACTGATGTTAACGTTTCACGTGTTTACA
ATTATGATATCATTCAAAAAAGAAAATTAAAACTATCAGGTAAAACTGAAGAAGAGGAAA
AATAAAAAAAAAAAAAATAAAAAAAGTAAAAATAAAAATATAATTAACTTTAA

---KKMATITNADPYKILFEQDIKTATNIPMVTFISNVEEFVKDKDVENVFKQLQEAYQK
YKFFESKLSNNISMLTQRSKQLQESLDIVDHVENKSNESFSVQYELSEGVYSSAQVNEPK
SIYLWLGANVMLEYSFEEAREVLRKNKDTVDRQLSESIQDLGFVKDQITTTDVNVSRVYN
YDIIQKRKLKLSGKTEEEEK*kkkk*kk*k*kyn*l*

Frame A:
---KKMATITNADPYKILFEQDIKTATNIPMVTFISNVEEFVKDKDVENVFKQLQEAYQK
YKFFESKLSNNISMLTQRSKQLQESLDIVDHVENKSNESFSVQYELSEGVYSSAQVNEPK
SIYLWLGANVMLEYSFEEAREVLRKNKDTVDRQLSESIQDLGFVKDQITTTDVNVSRVYN
YDIIQKRKLKLSGKTEEEEK*kkkk*kk*k*kyn*l*


Frame B:
---krwpqlqmqthikyylnki*kqqpifqwlhsfqmlknllkikmlkmfsnnykkhikn
inflnqnfqiifqc*lkdqnnyknl*ilsimlkinlmnhfqynmnfqkvftlqhk*mnqn
qfiyg*vqm*cwnihlkkqery*erikiqsivnlvrafki*vl*rikslqlmltfhvfti
misfkken*nyqvklkkrknkkkknkksknkniinf


Frame C:
---kdghnykcrpi*nii*tryknsnqysngyihfkc*ric*r*rc*kcfqtitrsiski
*if*iktfk*yfnvnskiktitrifrycrsc*k*i**iifsti*tfrrcllfstsk*tki
nlfmvrckcnvgifi*rskrgikke*rysrsst**ehsrfrfckgsnhyn*c*rftclql
*yhskkkiktir*n*rrgkikkkkikkvkiki*ltl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE728 (SSE728Q) /CSM/SS/SSE7-B/SSE728Q.Seq.d/                       1078   0.0
VSE760 (VSE760Q) /CSM/VS/VSE7-C/VSE760Q.Seq.d/                        954   0.0
VSE765 (VSE765Q) /CSM/VS/VSE7-C/VSE765Q.Seq.d/                        950   0.0
SSJ203 (SSJ203Q) /CSM/SS/SSJ2-A/SSJ203Q.Seq.d/                        767   0.0
VSA801 (VSA801Q) /CSM/VS/VSA8-A/VSA801Q.Seq.d/                        615   e-175
SSA756 (SSA756Q) /CSM/SS/SSA7-C/SSA756Q.Seq.d/                        537   e-152
VSJ381 (VSJ381Q) /CSM/VS/VSJ3-D/VSJ381Q.Seq.d/                         42   0.010
VSG334 (VSG334Q) /CSM/VS/VSG3-B/VSG334Q.Seq.d/                         42   0.010
VSG195 (VSG195Q) /CSM/VS/VSG1-D/VSG195Q.Seq.d/                         42   0.010
VSF777 (VSF777Q) /CSM/VS/VSF7-D/VSF777Q.Seq.d/                         42   0.010

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           38   4e-07  25
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    34   1e-05  11
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    34   2e-04  13
BX897725|BX897725.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-244P18.    40   4e-04  9
AP003191|AP003191.2 Clostridium perfringens DNA, complete genome, section 7/10.    34   5e-04  10
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             36   7e-04  16
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     36   7e-04  16
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  32   9e-04  13
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    40   0.001  13
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    30   0.001  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001333_264(CP001333|pid:none) Micromonas sp. RCC299 chromosome...   131   2e-29
BC054252_1(BC054252|pid:none) Xenopus laevis von Hippel-Lindau b...   128   1e-28
AM502244_135(AM502244|pid:none) Leishmania infantum chromosome 26.    126   5e-28
BC092334_1(BC092334|pid:none) Xenopus laevis hypothetical protei...   125   8e-28
BT047875_1(BT047875|pid:none) Salmo salar clone ssal-evf-520-165...   125   1e-27
AM494963_140(AM494963|pid:none) Leishmania braziliensis chromoso...   125   1e-27
BX908789_18(BX908789|pid:none) Neurospora crassa DNA linkage gro...   124   2e-27
CT005265_137(CT005265|pid:none) Leishmania major strain Friedlin...   124   2e-27
AY890868_1(AY890868|pid:none) Synthetic construct Homo sapiens c...   124   2e-27
BC132169_1(BC132169|pid:none) Mus musculus von Hippel-Lindau bin...   124   2e-27

 psg: 0.63  gvh: 0.29  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSE728 is nuc

>SSE728Z.Seq
----------GAAAAAGATGGCCACAATTACAAATGCAGACCCATATAAAATATTATTTG
AACAAGATATAAAAACAGCAACCAATATTCCAATGGTTACATTCATTTCAAATGTTGAAG
AATTTGTTAAAGATAAAGATGTTGAAAATGTTTTCAAACAATTACAAGAAGCATATCAAA
AATATAAATTTTTTGAATCAAAACTTTCAAATAATATTTCAATGTTAACTCAAAGATCAA
AACAATTACAAGAATCTTTAGATATTGTCGATCATGTTGAAAATAAATCTAATGAATCAT
TTTCAGTACAATATGAACTTTCAGAAGGTGTTTACTCTTCAGCACAAGTAAATGAACCAA
AATCAATTTATTTATGGTTAGGTGCAAATGTAATGTTGGAATATTCATTTGAAGAAGCAA
GAGAGGTATTAAGAAAGAATAAAGATACAGTCGATCGTCAACTTAGTGAGAGCATTCAAG
ATTTAGGTTTTGTAAAGGATCAAATCACTACAACTGATGTTAACGTTTCACGTGTTTACA
ATTATGATATCATTCAAAAAAGAAAATTAAAACTATCAGGTAAAACTGAAGAAGAGGAAA
AATAAAAAAAAAAAAAATAAAAAAAGTAAAAATAAAAATATAATTAACTTTAA