SSE723 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSE723
Library	SS (Link to library)
Clone ID	SSE723 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15575-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSE7-A/SSE723Q.Seq.d/
Representative seq. ID	SSE723E (Link to Original site)
Representative DNA sequence	>SSE723 (SSE723Q) /CSM/SS/SSE7-A/SSE723Q.Seq.d/ CAGAATTTGTTTTATTAAAATCACCACAATTATTTTATTTATGGTACACAGTATTAATAT TTCCATTGATGGCAATTAGATTTGTAATGTATCATCGTGAGAAATATCATTATTTCATGT TGGATTTCTGTTATCTTTGTCAAATATTGCTATTGTTTTATTTGTTTGGTCATCAATATA TTTTAGGAGAAAAGGTTACACCAAATTTATTCAAATTGGTATTTGCACTAAGTAATGGTC CATTGGCATGGCAATCGTATGGAGAAATAGTTTAGTATTCCATGATGTTGACAAGTTGAC ATCGGTTTTCATTCATCTTTGTCCACCAATTGTAACCTATTGTTTGCGTTGGTTCCCAAA CGTTTATCCAGAGCAATTGGCATGTGGTGGTGTAGAGTGTGTTTTATCCTTTAAAGAGAT TTTCTTTGTTCCATTCATGGTGTATGCATTTTGGCAAGTCTTTTACTACATTAAAACTGA GGTGGTCGATAGTGACAAATTAGCCAATGACAAGGAAATAATGACCTCTTCAAGATGGAT GTCTGTAAAACAACCCCACCCAATCTATAGATGGTGTCAAAAGAATGGTTACAACGTTAG TCCTGTGGTTATTTTAATTTAGTTCAAATGNTTTACACTTTGGCCACTTGTATCTCTTTA CCTTCTTAATTCAATCATTTTGGTTACACACTGTCTTTATGATTTACATCTTTGTCACAA TCTCTTGGAATGGTGCCTCTTATTATTTCGAAGTTTTCTCTGAAAACTATAGTTCACGTT TAAATAGTGAATTCAAACATAAACACAACAAAGATCAACCTTTAAAAATTACTTCAATCA AAGCTTTCTTAAAATTTTTAGCTTTATTCTTAACTTCTTTAATAGTTTATTTGAAATTAA TTTT
sequence update	1999. 4. 6
Translated Amino Acid sequence	ricfikittiilfmvhsinisidgnicnvsseislfhvgfllslsniaivlfvwssiy frrkgytkfiqigictkWSIGMAIVWRNSLVFHDVDKLTSVFIHLCPPIVTYCLRWFPN VYPEQLACGGVECVLSFKEIFFVPFMVYAFWQVFYYIKTEVVDSDKLANDKEIMTSSRWM SVKQPHPIYRWCQKNGYNVSPVVILIfkxftlwplvslyllnsiilvthclydlhlchn llewclllfrsflklftfk*iqttqqrstfknyfnqsflkifsfilnffnslfein f
Translated Amino Acid sequence (All Frames)	Frame A: qnlfynhhnyfiygtqyyfhwqldlciivrniiiscwisvifvkycycficlvini fekrlhqiysnwylhvmvhwhgnrmekfsipcqvdigfhsslstncnllfalvpk rlsraigmwwcrvcfilrdflcsihgvcilaslllhnggr*qisqqgnndlfkmd vckttppnlmvskewlqrscgyfnlvqmxytlatcislpsfnhfgytlslftslsq slgmvpliiskfslktivhvivnsninttkinlkllqsklsnflysllfin* f Frame B: ricfikittiilfmvhsinisidgnicnvsseislfhvgfllslsniaivlfvwssiy frrkgytkfiqigictkWSIGMAIVWRNSLVFHDVDKLTSVFIHLCPPIVTYCLRWFPN VYPEQLACGGVECVLSFKEIFFVPFMVYAFWQVFYYIKTEVVDSDKLANDKEIMTSSRWM SVKQPHPIYRWCQKNGYNVSPVVILIfkxftlwplvslyllnsiilvthclydlhlchn llewclllfrsflklftfk*iqttqqrstfknyfnqsflkifsfilnffnslfein f Frame C: efvllkspqlfylwytvlifplmairfvmyhrekyhyfmldfcylcqilllfylfghqyi lgekvtpnlfklvfalsngplawqsygeivysmmltshrfsfifvhqlpivcvgsqt fiqsnwhvvvsvfyplkrfslfhswcmhfgksfttlklrwsivtnpmtrkplqdgc lnnptqsidgvkrmvttlvlwlf*fssnxlhfghlylftfliqsfwlhtvfmiyifvti swngasyyfevfsenyssrlnsefkhkhnkdqplkitsikaflkflalfltslivylkli
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSE723 (SSE723Q) /CSM/SS/SSE7-A/SSE723Q.Seq.d/ 1786 0.0 AFE568 (AFE568Q) /CSM/AF/AFE5-C/AFE568Q.Seq.d/ 1269 0.0 CHC609 (CHC609Q) /CSM/CH/CHC6-A/CHC609Q.Seq.d/ 1213 0.0 SFL335 (SFL335Q) /CSM/SF/SFL3-B/SFL335Q.Seq.d/ 1168 0.0 VHO523 (VHO523Q) /CSM/VH/VHO5-A/VHO523Q.Seq.d/ 1154 0.0 CFI691 (CFI691Q) /CSM/CF/CFI6-D/CFI691Q.Seq.d/ 1114 0.0 SLD316 (SLD316Q) /CSM/SL/SLD3-A/SLD316Q.Seq.d/ 1084 0.0 CHM318 (CHM318Q) /CSM/CH/CHM3-A/CHM318Q.Seq.d/ 1068 0.0 VFE430 (VFE430Q) /CSM/VF/VFE4-B/VFE430Q.Seq.d/ 977 0.0 CHG164 (CHG164Q) /CSM/CH/CHG1-C/CHG164Q.Seq.d/ 965 0.0
own update	2003. 6.13
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AY159036\|AY159036.1 Dictyostelium discoideum LvsE (lvsE) gene, partial cds. 42 0.15 3 BH581813\|BH581813.1 BOGHK32TR BOGH Brassica oleracea genomic clone BOGHK32, DNA sequence. 48 0.19 1 AC116395\|AC116395.5 Mus musculus clone RP23-106K9, * SEQUENCING IN PROGRESS , 5 ordered pieces. 42 0.25 5 AC113934\|AC113934.2 Homo sapiens chromosome 1 clone RP11-526F14, complete sequence. 34 0.26 7 AC094367\|AC094367.11 Rattus norvegicus clone CH230-3F18, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 0.26 4 AP006380\|AP006380.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 4, clone:LjT01O24, TM0227. 32 0.39 5 AC016914\|AC016914.5 Homo sapiens chromosome 14 clone RP11-502F23, WORKING DRAFT SEQUENCE, 16 unordered pieces. 34 0.40 6 AC115684\|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 38 0.66 4 AC144222\|AC144222.1 Macaca mulatta clone CH250-272E23, SEQUENCING IN PROGRESS *, 1 ordered piece. 46 0.76 1 AC133501\|AC133501.1 Mus musculus chromosome UNK clone RP24-261K20, WORKING DRAFT SEQUENCE, 5 unordered pieces. 46 0.76 1
dna update	2003. 8.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AM451482_4(AM451482\|pid:none) Vitis vinifera contig VV78X165379.... 75 6e-24 EF147277_1(EF147277\|pid:none) Populus trichocarpa clone WS0122_C... 72 3e-23 AB015477_4(AB015477\|pid:none) Arabidopsis thaliana genomic DNA, ... 73 3e-23 BT033317_1(BT033317\|pid:none) Zea mays full-length cDNA clone ZM... 74 4e-21 AK069774_1(AK069774\|pid:none) Oryza sativa Japonica Group cDNA c... 74 6e-21 CU640366_277(CU640366\|pid:none) Podospora anserina genomic DNA c... 57 1e-16 AP007151_1250(AP007151\|pid:none) Aspergillus oryzae RIB40 genomi... 54 1e-15 CR954203_94(CR954203\|pid:none) Ostreococcus tauri strain OTTH059... 86 2e-15 CP000583_96(CP000583\|pid:none) Ostreococcus lucimarinus CCE9901 ... 85 3e-15 AE017342_480(AE017342\|pid:none) Cryptococcus neoformans var. neo... 57 4e-13
protein update	2009. 7. 7
PSORT	psg: 0.71 gvh: 0.57 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.03 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 36.0 %: cytoplasmic 8.0 %: mitochondrial 4.0 %: extracellular, including cell wall 4.0 %: vesicles of secretory system 4.0 %: endoplasmic reticulum >> prediction for SSE723 is nuc
5' end seq. ID	SSE723F
5' end seq.	>SSE723F.Seq CAGAATTTGTTTTATTAAAATCACCACAATTATTTTATTTATGGTACACAGTATTAATAT TTCCATTGATGGCAATTAGATTTGTAATGTATCATCGTGAGAAATATCATTATTTCATGT TGGATTTCTGTTATCTTTGTCAAATATTGCTATTGTTTTATTTGTTTGGTCATCAATATA TTTTAGGAGAAAAGGTTACACCAAATTTATTCAAATTGGTATTTGCACTAAGTAATGGTC CATTGGCATGGGNNACAATCGTATGGAGAAATAGTTTAGTATTCCATGATGTTGACAAGT TGACATCGGTTTTCATTCATCTTTGTCCACCAATTGTAACCTATTGTTTGCGTTGGTTCC CAAACGTTTATCCAGAGCAATTGGCATGTGGTGGTGTAGAGTGTGTTTTATCCTTTAAAG AGATTTTCTTTGTTCCATTCATGGTGTATGCATTTTGGCAAGTCTTTTACTACATTAAAA CTGAGGTGGTCGATAGTGACAAATTAGCCAATGACAAGGAAATAATGACCTCTTCAAGAT GGATGTCTGTAAAACAACCCCACCCAATCTATAGATGGTGTCAAAAGAATGGTTACAACG TTAGTCCTGTGGTTATTTTAATTT----------
Length of 5' end seq.	624
3' end seq. ID	SSE723Z
3' end seq.	>SSE723Z.Seq ----------CAATCGTATGGAGAAATAGTTTAGTATTCCATGATGTTGACAAGTTGACA TCGGTTTTCATTCATCTTTGTCCACCAATTGTAACCTATTGTTTGCGTTGGTTCCCAAAC GTTTATCCAGAGCAATTGGCATGTGGTGGTGTAGAGTGTGTTTTATCCTTTAAAGAGATT TTCTTTGTTCCATTCATGGTGTATGCATTTTGGCAAGTCTTTTACTACATTAAAACTGAG GTGGTCGATAGTGACAAATTAGCCAATGACAAGGAAATAATGACCTCTTCAAGATGGATG TCTGTAAAACAACCCCACCCAATCTATAGATGGTGTCAAAAGAATGGTTACAACGTTAGT CCTGTGGTTATTTTAATTTTAGTTCAAATGNTTTACACTTTGGCCACTTGTATCTCTTTA CCTTCTTAATTCAATCATTTTGGTTACACACTGTCTTTATGATTTACATCTTTGTCACAA TCTCTTGGAATGGTGCCTCTTATTATTTCGAAGTTTTCTCTGAAAACTATAGTTCACGTT TAAATAGTGAATTCAAACATAAACACAACAAAGATCAACCTTTAAAAATTACTTCAATCA AAGCTTTCTTAAAATTTTTAGCTTTATTCTTAACTTCTTTAATAGTTTATTTGAAATTAA TTTTATAAAAAAAAA
Length of 3' end seq.	665
Connected seq. ID	SSE723P
Connected seq.	>SSE723P.Seq CAGAATTTGTTTTATTAAAATCACCACAATTATTTTATTTATGGTACACAGTATTAATAT TTCCATTGATGGCAATTAGATTTGTAATGTATCATCGTGAGAAATATCATTATTTCATGT TGGATTTCTGTTATCTTTGTCAAATATTGCTATTGTTTTATTTGTTTGGTCATCAATATA TTTTAGGAGAAAAGGTTACACCAAATTTATTCAAATTGGTATTTGCACTAAGTAATGGTC CATTGGCATGGGNNACAATCGTATGGAGAAATAGTTTAGTATTCCATGATGTTGACAAGT TGACATCGGTTTTCATTCATCTTTGTCCACCAATTGTAACCTATTGTTTGCGTTGGTTCC CAAACGTTTATCCAGAGCAATTGGCATGTGGTGGTGTAGAGTGTGTTTTATCCTTTAAAG AGATTTTCTTTGTTCCATTCATGGTGTATGCATTTTGGCAAGTCTTTTACTACATTAAAA CTGAGGTGGTCGATAGTGACAAATTAGCCAATGACAAGGAAATAATGACCTCTTCAAGAT GGATGTCTGTAAAACAACCCCACCCAATCTATAGATGGTGTCAAAAGAATGGTTACAACG TTAGTCCTGTGGTTATTTTAATTT----------CAATCGTATGGAGAAATAGTTTAGTA TTCCATGATGTTGACAAGTTGACATCGGTTTTCATTCATCTTTGTCCACCAATTGTAACC TATTGTTTGCGTTGGTTCCCAAACGTTTATCCAGAGCAATTGGCATGTGGTGGTGTAGAG TGTGTTTTATCCTTTAAAGAGATTTTCTTTGTTCCATTCATGGTGTATGCATTTTGGCAA GTCTTTTACTACATTAAAACTGAGGTGGTCGATAGTGACAAATTAGCCAATGACAAGGAA ATAATGACCTCTTCAAGATGGATGTCTGTAAAACAACCCCACCCAATCTATAGATGGTGT CAAAAGAATGGTTACAACGTTAGTCCTGTGGTTATTTTAATTTTAGTTCAAATGNTTTAC ACTTTGGCCACTTGTATCTCTTTACCTTCTTAATTCAATCATTTTGGTTACACACTGTCT TTATGATTTACATCTTTGTCACAATCTCTTGGAATGGTGCCTCTTATTATTTCGAAGTTT TCTCTGAAAACTATAGTTCACGTTTAAATAGTGAATTCAAACATAAACACAACAAAGATC AACCTTTAAAAATTACTTCAATCAAAGCTTTCTTAAAATTTTTAGCTTTATTCTTAACTT CTTTAATAGTTTATTTGAAATTAATTTTATAAAAAAAAA
Length of connected seq.	1289
Full length Seq ID	SSE723E
Full length Seq.	>SSE723E.Seq CAGAATTTGTTTTATTAAAATCACCACAATTATTTTATTTATGGTACACAGTATTAATAT TTCCATTGATGGCAATTAGATTTGTAATGTATCATCGTGAGAAATATCATTATTTCATGT TGGATTTCTGTTATCTTTGTCAAATATTGCTATTGTTTTATTTGTTTGGTCATCAATATA TTTTAGGAGAAAAGGTTACACCAAATTTATTCAAATTGGTATTTGCACTAAGTAATGGTC CATTGGCATGGCAATCGTATGGAGAAATAGTTTAGTATTCCATGATGTTGACAAGTTGAC ATCGGTTTTCATTCATCTTTGTCCACCAATTGTAACCTATTGTTTGCGTTGGTTCCCAAA CGTTTATCCAGAGCAATTGGCATGTGGTGGTGTAGAGTGTGTTTTATCCTTTAAAGAGAT TTTCTTTGTTCCATTCATGGTGTATGCATTTTGGCAAGTCTTTTACTACATTAAAACTGA GGTGGTCGATAGTGACAAATTAGCCAATGACAAGGAAATAATGACCTCTTCAAGATGGAT GTCTGTAAAACAACCCCACCCAATCTATAGATGGTGTCAAAAGAATGGTTACAACGTTAG TCCTGTGGTTATTTTAATTTAGTTCAAATGNTTTACACTTTGGCCACTTGTATCTCTTTA CCTTCTTAATTCAATCATTTTGGTTACACACTGTCTTTATGATTTACATCTTTGTCACAA TCTCTTGGAATGGTGCCTCTTATTATTTCGAAGTTTTCTCTGAAAACTATAGTTCACGTT TAAATAGTGAATTCAAACATAAACACAACAAAGATCAACCTTTAAAAATTACTTCAATCA AAGCTTTCTTAAAATTTTTAGCTTTATTCTTAACTTCTTTAATAGTTTATTTGAAATTAA TTTT
Length of full length seq.	904

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas