>SSE709 (SSE709Q) /CSM/SS/SSE7-A/SSE709Q.Seq.d/
XXXXXXXXXXAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCTACAGAATCAGC
TACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTTATGGATATGGT
TACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCTGCATGGAATTG
GTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAATTCCAACTTGTCC
ACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATGTACTAAAGAGTGTCA
ATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGCTAAAATTTATTCTTT
CGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCCAGTCGAAGCTTGTTT
CACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGTCCACACAACTGGTAA
AGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTTAAATGGTGTTGATTA
CTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGGAACTTTCTTAATCAA
ACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGCTGGTTTACCATAAATAAAAATAAG
TTTTAAACATTTTGTAATTTTAAAAAAAAAAA

---QARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWL
RKQGAVSEECLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFD
SDEAIMQEIVTNGPVEACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLNGVDYY
AANNQWTTSWGDNGTFLIKRGDCGISDDVVAGLP*ikisfkhfvilkkk

Frame A:
---ikqdvvlvgllvlqnqllivyvftimkmfn*vlwiwllvmklitvvkvvmpslhgig
*eskvlyqknvfhiqfqlvhqlnnhv*ilstlhhvlksvnqipl*filktnikwlkfils
tlmkqsckklllmvqsklvslslkislltnlvftstqlvki*vvtvlnslvsvp*mvlit
mplttngqlhgvimels*snvviavslmtlllvyhk*k*vlnil*f*kkk


Frame B:
---sskmwfllgfwcyrisy*sfmysq**kcsikfygygyl**n**rl*rw*cllcmelv
kkarccirrmssiynsnlstssttmfkfcqhsimy*rvsikflfnlfsrqt*ng*nlffr
l**snharncy*wssrslfhcl*rfpclqiwclrphnw*rfrwslc*trwfrylkwc*ll
cr*qpmdnfmg**wnflnqtw*lryl**rccwftinknkf*tfcnfkkk


Frame C:
---QARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWL
RKQGAVSEECLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFD
SDEAIMQEIVTNGPVEACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLNGVDYY
AANNQWTTSWGDNGTFLIKRGDCGISDDVVAGLP*ikisfkhfvilkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK863 (SSK863Q) /CSM/SS/SSK8-C/SSK863Q.Seq.d/                       1330   0.0
SSK787 (SSK787Q) /CSM/SS/SSK7-D/SSK787Q.Seq.d/                       1330   0.0
SSE709 (SSE709Q) /CSM/SS/SSE7-A/SSE709Q.Seq.d/                       1330   0.0
SLH613 (SLH613Q) /CSM/SL/SLH6-A/SLH613Q.Seq.d/                       1330   0.0
SSK654 (SSK654Q) /CSM/SS/SSK6-C/SSK654Q.Seq.d/                       1322   0.0
SSD418 (SSD418Q) /CSM/SS/SSD4-A/SSD418Q.Seq.d/                       1316   0.0
VSD136 (VSD136Q) /CSM/VS/VSD1-B/VSD136Q.Seq.d/                       1298   0.0
SFK635 (SFK635Q) /CSM/SF/SFK6-B/SFK635Q.Seq.d/                       1296   0.0
VFD555 (VFD555Q) /CSM/VF/VFD5-C/VFD555Q.Seq.d/                       1285   0.0
VFB609 (VFB609Q) /CSM/VF/VFB6-A/VFB609Q.Seq.d/                       1279   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG132206|BG132206.1 EST465098 tomato crown gall Lycopersicon esculentum cDNA clonecTOE6F18 5' sequence, mRNA sequence.    54   8e-05  2
CK294078|CK294078.1 EST756792 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMCK72 5' end, mRNA sequence.    54   2e-04  2
BG887746|BG887746.1 EST513597 cSTD Solanum tuberosum cDNA clone cSTD7G17 5' sequence, mRNA sequence.    54   0.003  1
CB292489|CB292489.1 UCRCS01_04cd07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cd07, mRNA sequence.    54   0.003  1
AW650123|AW650123.1 EST328577 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI12C1 5', mRNA sequence.    54   0.003  1
BF187220|BF187220.1 EST443507 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA39D17 5' sequence, mRNA sequence.    54   0.003  1
CF828170|CF828170.1 UCRCR01_01C19_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C19, mRNA sequence.    54   0.003  1
AW928683|AW928683.1 EST337471 tomato flower buds 8 mm to pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOC2D20 5', mRNA sequence.    54   0.003  1
X81995|X81995.1 N.rustica mRNA for cathepsin B-like cysteine proteinase.    54   0.003  1
BE473010|BE473010.1 EST417863 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA35F24, mRNA sequence.    54   0.003  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QD9) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   458   e-128
BC072490_1(BC072490|pid:none) Rattus norvegicus cathepsin B, mRN...   212   7e-54
(P00787) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   212   7e-54
M11305_1(M11305|pid:none) Rat cathepsin B mRNA, 3' end.               212   7e-54
AC149038_4(AC149038|pid:none) Medicago truncatula chromosome 7 c...   211   2e-53
EU532428_1(EU532428|pid:none) Sus scrofa cathepsin B (CTSB) gene...   209   6e-53
(P07688) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   209   6e-53
(A1E295) RecName: Full=Cathepsin B;          EC=3.4.22.1; Contai...   209   6e-53
AC149038_3(AC149038|pid:none) Medicago truncatula chromosome 7 c...   207   3e-52
BC115254_1(BC115254|pid:none) Danio rerio capthepsin B, b, mRNA ...   206   5e-52

 psg: 0.90  gvh: 0.46  alm: 0.46  top: 0.30  tms: 0.00  mit: 0.22  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSE709 is cyt

>SSE709Z.Seq
----------AATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCTACAGAATCAGC
TACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTTATGGATATGGT
TACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCTGCATGGAATTG
GTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAATTCCAACTTGTCC
ACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATGTACTAAAGAGTGTCA
ATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGCTAAAATTTATTCTTT
CGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCCAGTCGAAGCTTGTTT
CACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGTCCACACAACTGGTAA
AGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTTAAATGGTGTTGATTA
CTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGGAACTTTCTTAATCAA
ACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGCTGGTTTACCATAAATAAAAATAAG
TTTTAAACATTTTGTAATTTTAAAAAAAAAAA