AFL214
Library AF
(Link to library)
Clone ID AFL214
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15510-1
Original site URL
Representative seq. ID AFL214P
(Link to Original site)
Representative DNA sequence
>AFL214 (AFL214Q) /CSM/AF/AFL2-A/AFL214Q.Seq.d/
AGAAAAACTAATAATATATTTAAGATGTCTGAAAATTNATCACCAAAATTAGAATCAACA
TCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACCTAAAGGCAAA
GAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATTCGTTTTCAAT
GAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGTTTATGATGCA
TCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACGTATTATGAAA
AATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGATGATAAAATC
ATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAAATGGGAGACT
GCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATTAACAAGAGTT
ACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTATTTCAAATGGATTTGCA
TATGAATCAAATGGATCAGTTTATTTTGATACAGTAGCATTTTCAAAAGCACATGATTAT
GGTAAATTAXXXXXXXXXXTTTACATTAGATCATGTGCTGAACAAAAGACAAATCCAAGA
TTAAATTTAATTAGTGCAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTCGGGTTT
AACCGAATCTTCAACCGCCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGTAATAT
CGAAGAGGAGATGACTCCAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTACGTGC
TTCTGCAATCGCAAAAGATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGTGATGA
GGTTTTACCATTATTGGGCGTAAAGATTGATGATAAATCCGCAACAACTGCAATGTGGAA
ATTTGAAGATAAAGAAACCCTCAAAAAAGAAATTGAACAAAAGAAAGAAATTGAAAAGAA
GAAACAAGCTGACAAGGAAGAAAAAGAAAAAAAATTAAAAGAGAAATTTGAAAAATCAAA
AATTCCACCACAACAACTCTTTATCAATGAAACNTGATAAATACTCAAAATTCAATGAAT
TGGGTATGCCAACTCATGATAAGGAAGGTGTTGAAATTACAAAATCACAATTAAAAAAAT
TACAAAAAGAATATGATAATCAAACTAAAGAACATAATAATTATTGAAATCATTATCAAC
TTCAACATCATCACCAACTTNACTTCAACTCAATCACCACAATAAAATNTTTTAAATAAA
TAAATAAATAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
RKTNNIFKMSENXSPKLESTSAAAASTKKPFPEWIKPKGKETELLINNSLTGGKVPFVFN
ESGKGRSLTWYACGPTVYDASHMGHARTYISFDIIRRIMKNYLGFNIQYVMNITDIDDKI
IIRANENGISHSDLSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEKIISNGFA
YESNGSVYFDTVAFSKAHDYGKL---

---YIRSCAEQKTNPRLNLISAIAEYITYIFSVFGFNRIFNRLFNDWFRFRW*r*yrrgd
dsnlkcshsipfrgtcfcnrkryylnp*nl**ps**gftiigrkd***irnncnvei*r*
rnpqkrn*tkern*keets*qgrkrkkikrei*kiknsttttlyq*nxintqnsmnwvcq
lmirkvlklqnhn*knykknmiiklkniiiieiiinfniitnxtstqspq*nxlnk*ink


Translated Amino Acid sequence (All Frames)
Frame A:
RKTNNIFKMSENXSPKLESTSAAAASTKKPFPEWIKPKGKETELLINNSLTGGKVPFVFN
ESGKGRSLTWYACGPTVYDASHMGHARTYISFDIIRRIMKNYLGFNIQYVMNITDIDDKI
IIRANENGISHSDLSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEKIISNGFA
YESNGSVYFDTVAFSKAHDYGKL---

---ftldhvlnkrqiqd*i*lvqsqsisltfslfsgltesstassmigfgsagkgnieee
mtpilnaltqfrsevrasaiakdttsilktcdnlrdevlpllgvkiddksattamwkfed
ketlkkeieqkkeiekkkqadkeekekklkekfekskippqqlfinet**ilkiq*igya
ns**grc*nykitikkitkri**sn*rt**llkslststssptxlqlnhhnkxf*ink*i
k

Frame B:
ekliiylrclkixhqn*nqhqqqqqvqknhsqnglnlkakklny*liiv*qvvkyhsfsm
kvvkvdh*hgmlvvqqfmmhhiwvmlelilvlisldvl*kiilvsisnml*tlpilmiks
lfvqmkmvfhivifqkngrllslki*ny*myyhqmh*qelqnmyhkllnmlkrlfqmdlh
mnqmdqfiliq*hfqkhmimvn---

---lh*imc*tkdkskikfn*cnrrvyhlhflcfrv*pnlqpplq*lvsvplvkviskrr
*lqs*mlslnsvqryvllqsqkilpqslklvitfvmrfyhywa*rlminpqqlqcgnlki
kkpskkklnkrkklkrrnkltrkkkkkn*krnlknqkfhhnnslsmkxdkyskfnelgmp
thdkegveitksqlkklqkeydnqtkehnny*nhyqlqhhhqlxfnsittikxfk*ink*

Frame C:
kn**yi*dv*kxitkirinisssskykktiprmd*t*rqrn*iin***fnrw*stirfq*
kw*r*iinmvclwsnsl*citygsc*nly*f*yh*tyyeklswfqypicyehyry***nh
ysck*kwyft**sfkkmgdcfl*ryeiikcittrcinksyricttnc*ic*kdyfkwici
*ikwislf*yssifkst*lw*i---

---YIRSCAEQKTNPRLNLISAIAEYITYIFSVFGFNRIFNRLFNDWFRFRW*r*yrrgd
dsnlkcshsipfrgtcfcnrkryylnp*nl**ps**gftiigrkd***irnncnvei*r*
rnpqkrn*tkern*keets*qgrkrkkikrei*kiknsttttlyq*nxintqnsmnwvcq
lmirkvlklqnhn*knykknmiiklkniiiieiiinfniitnxtstqspq*nxlnk*ink

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFL214 (AFL214Q) /CSM/AF/AFL2-A/AFL214Q.Seq.d/ 1746 0.0
SFD396 (SFD396Q) /CSM/SF/SFD3-D/SFD396Q.Seq.d/ 1118 0.0
AFH281 (AFH281Q) /CSM/AF/AFH2-D/AFH281Q.Seq.d/ 1118 0.0
AFG246 (AFG246Q) /CSM/AF/AFG2-B/AFG246Q.Seq.d/ 1118 0.0
VHC506 (VHC506Q) /CSM/VH/VHC5-A/VHC506Q.Seq.d/ 1108 0.0
AFO629 (AFO629Q) /CSM/AF/AFO6-B/AFO629Q.Seq.d/ 1108 0.0
AFN666 (AFN666Q) /CSM/AF/AFN6-C/AFN666Q.Seq.d/ 1108 0.0
AFD870 (AFD870Q) /CSM/AF/AFD8-C/AFD870Q.Seq.d/ 1108 0.0
AFO752 (AFO752Q) /CSM/AF/AFO7-C/AFO752Q.Seq.d/ 1106 0.0
AFK480 (AFK480Q) /CSM/AF/AFK4-D/AFK480Q.Seq.d/ 1106 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 60 7e-09 12
CR382123|CR382123.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis. 70 1e-07 1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 3e-07 19
AQ449880|AQ449880.1 500005E02.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomic similar to cysteinyl-tRNA synthetase, DNA sequence. 66 2e-06 1
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2. 32 2e-05 18
AC012844|AC012844.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 40 2e-05 6
AI980689|AI980689.1 pat.pk0031.a6.f chicken activated T cell cDNA Gallus gallus cDNA clone pat.pk0031.a6.f 5' similar to cysteinyl-tRNA synthetase, mRNA sequence. 42 1e-04 2
CO422681|CO422681.1 GGEZHT1014A04.g HT1 Gallus gallus cDNA clone GGEZHT1014A04, mRNA sequence. 42 1e-04 2
CO772820|CO772820.1 testis_EST03917 Testis cDNA Library Gallus gallus cDNA 3', mRNA sequence. 42 2e-04 2
BX538350|BX538350.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 1/4. 58 4e-04 1
dna update 2004. 8. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE014185_147(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 192 2e-47
BX538350_42(BX538350|pid:none) Cryptosporidium parvum chromosome... 190 1e-46
AL590448_49(AL590448|pid:none) chromosome VIII of strain GB-M1 o... 172 2e-41
CR940352_62(CR940352|pid:none) Theileria annulata strain Ankara ... 167 1e-39
BC166536_1(BC166536|pid:none) Rattus norvegicus similar to hypot... 166 2e-39
(Q8BYM8) RecName: Full=Probable cysteinyl-tRNA synthetase, mitoc... 164 8e-39
AK021302_1(AK021302|pid:none) Mus musculus 13 days embryo stomac... 164 8e-39
AK009937_1(AK009937|pid:none) Mus musculus adult male tongue cDN... 164 8e-39
AK041962_1(AK041962|pid:none) Mus musculus 3 days neonate thymus... 164 8e-39
BC007220_1(BC007220|pid:none) Homo sapiens cysteinyl-tRNA synthe... 163 1e-38
protein update 2009. 4.25
PSORT

psg: 0.57 gvh: 0.38 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal

>> prediction for AFL214 is cyt

5' end seq. ID AFL214F
5' end seq.
>AFL214F.Seq
AGAAAAACTAATAATATATTTAAGATGTCTGAAAATTNATCACCAAAATTAGAATCAACA
TCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACCTAAAGGCAAA
GAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATTCGTTTTCAAT
GAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGTTTATGATGCA
TCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACGTATTATGAAA
AATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGATGATAAAATC
ATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAAATGGGAGACT
GCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATTAACAAGAGTT
ACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTATTTCAAATGGATTTGCA
TATGAATCAAATGGATCAGTTTATTTTGATACAGTAGCATTTTCAAAAGCACATGATTAT
GGTAAATTA----------
Length of 5' end seq. 609
3' end seq. ID AFL214Z
3' end seq.
>AFL214Z.Seq
----------TTTACATTAGATCATGTGCTGAACAAAAGACAAATCCAAGATTAAATTTA
ATTAGTGCAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTCGGGTTTAACCGAATC
TTCAACCGCCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGTAATATCGAAGAGGA
GATGACTCCAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTACGTGCTTCTGCAAT
CGCAAAAGATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGTGATGAGGTTTTACC
ATTATTGGGCGTAAAGATTGATGATAAATCCGCAACAACTGCAATGTGGAAATTTGAAGA
TAAAGAAACCCTCAAAAAAGAAATTGAACAAAAGAAAGAAATTGAAAAGAAGAAACAAGC
TGACAAGGAAGAAAAAGAAAAAAAATTAAAAGAGAAATTTGAAAAATCAAAAATTCCACC
ACAACAACTCTTTATCAATGAAACNTGATAAATACTCAAAATTCAATGAATTGGGTATGC
CAACTCATGATAAGGAAGGTGTTGAAATTACAAAATCACAATTAAAAAAATTACAAAAAG
AATATGATAATCAAACTAAAGAACATAATAATTATTGAAATCATTATCAACTTCAACATC
ATCACCAACTTNACTTCAACTCAATCACCACAATAAAATNTTTTAAATAAATAAATAAAT
AAAA
Length of 3' end seq. 714
Connected seq. ID AFL214P
Connected seq.
>AFL214P.Seq
AGAAAAACTAATAATATATTTAAGATGTCTGAAAATTNATCACCAAAATTAGAATCAACA
TCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACCTAAAGGCAAA
GAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATTCGTTTTCAAT
GAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGTTTATGATGCA
TCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACGTATTATGAAA
AATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGATGATAAAATC
ATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAAATGGGAGACT
GCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATTAACAAGAGTT
ACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTATTTCAAATGGATTTGCA
TATGAATCAAATGGATCAGTTTATTTTGATACAGTAGCATTTTCAAAAGCACATGATTAT
GGTAAATTA----------TTTACATTAGATCATGTGCTGAACAAAAGACAAATCCAAGA
TTAAATTTAATTAGTGCAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTCGGGTTT
AACCGAATCTTCAACCGCCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGTAATAT
CGAAGAGGAGATGACTCCAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTACGTGC
TTCTGCAATCGCAAAAGATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGTGATGA
GGTTTTACCATTATTGGGCGTAAAGATTGATGATAAATCCGCAACAACTGCAATGTGGAA
ATTTGAAGATAAAGAAACCCTCAAAAAAGAAATTGAACAAAAGAAAGAAATTGAAAAGAA
GAAACAAGCTGACAAGGAAGAAAAAGAAAAAAAATTAAAAGAGAAATTTGAAAAATCAAA
AATTCCACCACAACAACTCTTTATCAATGAAACNTGATAAATACTCAAAATTCAATGAAT
TGGGTATGCCAACTCATGATAAGGAAGGTGTTGAAATTACAAAATCACAATTAAAAAAAT
TACAAAAAGAATATGATAATCAAACTAAAGAACATAATAATTATTGAAATCATTATCAAC
TTCAACATCATCACCAACTTNACTTCAACTCAATCACCACAATAAAATNTTTTAAATAAA
TAAATAAATAAAA
Length of connected seq. 1323
Full length Seq ID -
Full length Seq. -
Length of full length seq. -