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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE647
Library SS
(Link to library)
Clone ID SSE647
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSE647Z
(Link to Original site)
Representative DNA sequence 
>SSE647 (SSE647Q) /CSM/SS/SSE6-B/SSE647Q.Seq.d/
XXXXXXXXXXTAAATATTGTATCACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCC
AAAGAATCTGACACCCAATTTGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCC
TCAAAAATTCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCT
CAAAATCAAGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTT
TCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAA
GTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGT
AGTGGATCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTACT
GGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGT
ATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTA
CTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 6.17
Translated Amino Acid sequence 
---NIVSQLKGIKGSVFVAKESDTQFEIEGAQNILLSEASKIQPTLSNKVVDIVVVLLAQ
NQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGS
GSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKSKVL
*kkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---kycitikryqrisfccqri*hpi*n*rcpkyfiirslknstnlikqsc*yrscftrs
ksrlnhqtipicc*kiiirfflyccfcs*i*cssyfqqts*tiiftrwfiiikfsqptr*
wik*frik*tn*ttfhlcywsspfclfdylnlishfihwyllyf*spssr*irstkeqst
lkkkkkkkkkkkk


Frame B:
---NIVSQLKGIKGSVFVAKESDTQFEIEGAQNILLSEASKIQPTLSNKVVDIVVVLLAQ
NQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGS
GSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKSKVL
*kkkkkkkkkkk


Frame C:
---ilyhn*kvskdqfllpknltpnlklkvpkifyyqkpqkfnqpyqtkllis*lfyslk
iktqpsnnsnlllknhhsflsllllllmnlmfkllstnklnnhfykmvhhh*iqpankvv
dqvvqdqmnqlnnislmllvqsflli*lsqsy*pfyslvfvvfliskfqidtkhqrakyf
kkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                       1059   0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                       1059   0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                       1059   0.0
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/                       1059   0.0
SSE647 (SSE647Q) /CSM/SS/SSE6-B/SSE647Q.Seq.d/                       1059   0.0
SSE549 (SSE549Q) /CSM/SS/SSE5-C/SSE549Q.Seq.d/                       1059   0.0
SSC826 (SSC826Q) /CSM/SS/SSC8-B/SSC826Q.Seq.d/                       1059   0.0
FC-AZ21 (FC-AZ21Q) /CSM/FC/FC-AZ/FC-AZ21Q.Seq.d/                     1059   0.0
SSF445 (SSF445Q) /CSM/SS/SSF4-B/SSF445Q.Seq.d/                       1057   0.0
SSB693 (SSB693Q) /CSM/SS/SSB6-D/SSB693Q.Seq.d/                       1053   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   545   0.0    4
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   0.001  11
AP003131|AP003131.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 3/10.    38   0.044  8
AC113655|AC113655.4 Rattus norvegicus clone CH230-307E9, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.    40   0.081  2
AP004824|AP004824.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 3/10.    38   0.087  7
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.23   10
AC124921|AC124921.3 Rattus norvegicus clone CH230-214L24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40   0.27   6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    30   0.36   15
AC010073|AC010073.2 Homo sapiens chromosome 15 clone RP11-16E3 map 15q25, LOW-PASS SEQUENCE SAMPLING.    38   0.36   4
AC111943|AC111943.4 Rattus norvegicus clone CH230-207F15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46   0.55   1
dna update 2004. 2. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   222   6e-57
protein update 2009. 1.29
PSORT 

 psg: 0.70  gvh: 0.47  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 20.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSE647 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSE647Z
3' end seq. 
>SSE647Z.Seq
----------TAAATATTGTATCACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCC
AAAGAATCTGACACCCAATTTGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCC
TCAAAAATTCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCT
CAAAATCAAGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTT
TCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAA
GTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGT
AGTGGATCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTACT
GGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGT
ATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTA
CTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 571
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -