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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE645
Library SS
(Link to library)
Clone ID SSE645
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15454-1
Original site URL
Representative seq. ID SSE645E
(Link to Original site)
Representative DNA sequence 
>SSE645 (SSE645Q) /CSM/SS/SSE6-B/SSE645Q.Seq.d/
ACCAAAATGCTTAACAAGAAAATCATCAAACCAGCTGGTAAAGTTGCCACTGAATTCGAA
AACACTGTTGCCCAAGCATTAGTTGATTTGGAAAACAACAACGCCGANTTAAAAGACTTN
ANAGATTTATCAGTCTGTTCAGTCAAGGAAGTCGATGTTGCTGAATCCNANAAAAGCTGT
TGTCATCTTTGTTCCATTCCGTCAACTCAAAAACTACAACAAAATCCAACNNNAATTAAC
CTATGAAGTTGAAAAGAAACTCGGTGGTAAACAAGTTATGTTCATTGCCCAAAGACGTAT
CATCCGTAAGCCAGCCTCAAACAACAAGATTAAAATGCAAAAGAGACCAATCTCCCGTAC
CATTAAAGCTGTCCACGATGCTATTCTCGATGATTTAGTATTCCCAAACACTATTGTTGG
TCGTCGTTTAAGATACAGATTAGATGGTTCAAAACTCCACAAAATCTACTTAGATCGTAA
AGAAATGTTATCAAACATCTCTAAAGTTGACTCCTTCTCTGCTGTCTACCACAAATTAAC
TGGTAAAGAAGTTGTCTTTGAATTCACTCAACAAACCGCTGAAAACTAAATAAAAAAGTA
ATTTTTTTAAACA
sequence update 1999. 4. 6
Translated Amino Acid sequence 
pkcltrkssnqlvklplnsktllpkh*liwktttpx*KTXXIYQSVQSRKSMLLNPXKAV
VIFVPFRQLKNYNKIQXXLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKIKMQKRPISRT
IKAVHDAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVDSFSAVYHKLT
GKEVVFEFTQQTAEN*ikk*ff*t
Translated Amino Acid sequence (All Frames) 
Frame A:
tkmlnkkiikpagkvatefentvaqalvdlennnaxlkdxxdlsvcsvkevdvaesxksc
chlcsipstqklqqnptxinl*s*ketrw*tsyvhcpktyhp*aslkqqd*naketnlpy
h*scprcysr*fsipkhycwssfkiqirwfktpqnllrs*rnvikhl*s*lllcclpqin
w*rscl*ihstnr*klnkkvifln


Frame B:
pkcltrkssnqlvklplnsktllpkh*liwktttpx*KTXXIYQSVQSRKSMLLNPXKAV
VIFVPFRQLKNYNKIQXXLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKIKMQKRPISRT
IKAVHDAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVDSFSAVYHKLT
GKEVVFEFTQQTAEN*ikk*ff*t


Frame C:
qna*qenhqtsw*sch*irkhccpsis*fgkqqrrxkrlxrfislfsqgsrcc*ixxkll
sslfhsvnsktttksnxn*pmklkrnsvvnklcslpkdvssvsqpqttrlkckrdqspvp
lklstmlfsmi*ysqtlllvvv*dtd*mvqnstkst*ivkkcyqtslkltpsllsttn*l
vkklslnslnkplktk*ksnffk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE645 (SSE645Q) /CSM/SS/SSE6-B/SSE645Q.Seq.d/                       1144   0.0
VSA256 (VSA256Q) /CSM/VS/VSA2-C/VSA256Q.Seq.d/                       1134   0.0
VHE528 (VHE528Q) /CSM/VH/VHE5-B/VHE528Q.Seq.d/                       1134   0.0
FC-AN14 (FC-AN14Q) /CSM/FC/FC-AN/FC-AN14Q.Seq.d/                     1132   0.0
VHG254 (VHG254Q) /CSM/VH/VHG2-C/VHG254Q.Seq.d/                       1118   0.0
VFJ336 (VFJ336Q) /CSM/VF/VFJ3-B/VFJ336Q.Seq.d/                       1112   0.0
VFL315 (VFL315Q) /CSM/VF/VFL3-A/VFL315Q.Seq.d/                       1110   0.0
VHE742 (VHE742Q) /CSM/VH/VHE7-B/VHE742Q.Seq.d/                       1055   0.0
VFE555 (VFE555Q) /CSM/VF/VFE5-C/VFE555Q.Seq.d/                       1025   0.0
VSC708 (VSC708Q) /CSM/VS/VSC7-A/VSC708Q.Seq.d/                        303   2e-81
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CA822178|CA822178.1 R04F08 two-month-old roots from clone 'Beaupre' Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA 5', mRNA sequence.    56  5e-04  1
BI130017|BI130017.1 G099P07Y Populus cambium cDNA library Populus tremula x Populus tremuloides cDNA, mRNA sequence.    56  5e-04  1
CA929873|CA929873.1 MTU2CA.P3.H06 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    56  5e-04  1
CA929744|CA929744.1 MTU2CA.P2.B05 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    56  5e-04  1
CA929228|CA929228.1 MTU2CA.P10.G09 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    56  5e-04  1
CA823832|CA823832.1 R32A08 two-month-old roots from clone 'Beaupre' Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA 5', mRNA sequence.    56  5e-04  1
BU883026|BU883026.1 UM85TD07 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    56  5e-04  1
BU815796|BU815796.1 N046G02 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    56  5e-04  1
AI164364|AI164364.1 A060P79U Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA 5', mRNA sequence.    56  5e-04  1
BU881533|BU881533.1 UM64TA03 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    56  5e-04  1
dna update 2003. 8.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU124935_1(EU124935|pid:none) Arenicola marina ribosomal protein...   145   3e-40
EF146872_1(EF146872|pid:none) Populus trichocarpa clone WS0121_F...   138   5e-40
EF145722_1(EF145722|pid:none) Populus trichocarpa clone WS0112_P...   139   8e-40
EF146088_1(EF146088|pid:none) Populus trichocarpa clone WS0115_H...   138   2e-39
EF145519_1(EF145519|pid:none) Populus trichocarpa clone WS01125_...   139   3e-39
EU284933_1(EU284933|pid:none) TSA: Elaeis guineensis EgEfMPOB001...   137   8e-39
EU247173_1(EU247173|pid:none) Lycosa singoriensis clone LSsin939...   145   1e-38
EU139174_1(EU139174|pid:none) Flustra foliacea putative 40S ribo...   144   1e-38
AY846832_1(AY846832|pid:none) Triticum aestivum ribosomal protei...   137   2e-38
BT051295_1(BT051295|pid:none) Medicago truncatula clone MTYF1_F2...   134   7e-38
protein update 2009. 7. 7
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSE645 is mit
5' end seq. ID SSE645F
5' end seq. 
>SSE645F.Seq
ACCAAAATGCTTAACAAGAAAATCATCAAACCAGCTGGTAAAGTTGCCACTGAATTCGAA
AACACTGTTGCCCAAGCATTAGTTGATTTGGAAAACAACAACGCCGAATTAAAAGACTTA
AAAGATTTATCAGTCTGTTCAGTCAAGGAAGTCGATGTTGCTGAATCCAAAAAAAGCTGT
TGTCATCTTTGTTCCATTCCGTCAACTCAAAAACTACAACAAAATCCAACAAAAATTAAC
CTATGAAGTTGAAAAGAAACTCGGTGGTAAACAAGTTATGTTCATTGCCCAAAGACGTAT
CATCCGTAAGCCAGCCTCAAACAACAAGATTAAAATGCAAAAGAGACCAATCTCCCGTAC
CATTAAAGCTGTCCACGATGCTATTCTCGATGATTTAGTATTCCCAAACACTATTGTTGG
TCGTCGTTTAAGATACAGATTAGATGGTTCAAAACTCCACAAAATCTACTTAGATCGTAA
AGAAATGTTATCAAACATCTCTAAAGTTGACTCCTTCTCTGCTGTCTACCACAAATTAAC
TGGTAAAGAAGTTGTCTTTGAATTCACTCAACAAACCGCTGAAAACTAAATAAAAAAGTA
ATTTTTTTAAACA
Length of 5' end seq. 613
3' end seq. ID SSE645Z
3' end seq. 
>SSE645Z.Seq
----------AAACCAGCTGGTAAAGTTGCCACTGAATTCGAAAACACTGTTGCCCAAGC
ATTAGTTGATTTGGAAAACAACAACGCCGATTTAAAAGACTTTATAGATTTATCAGTCTG
TTCAGTCAAGGAAGTCGATGTTGCTGAATCCTNTAAAAGCTGTTGTCATCTTTGTTCCAT
TCCGTCAACTCAAAAACTACAACAAAATCCNACTTTAATTAACCTATGAAGTTGAAAAGA
AACTCGGTGGTAAACAAGTTATGTTCATTGCCCAAAGACGTATCATCCGTAAGCCAGCCT
CAAACAACAAGATTAAAATGCAAAAGAGACCAATCTCCCGTACCATTAAAGCTGTCCACG
ATGCTATTCTCGATGATTTAGTATTCCCAAACACTATTGTTGGTCGTCGTTTAAGATACA
GATTAGATGGTTCAAAACTCCACAAAATCTACTTAGATCGTAAAGAAATGTTATCAAACA
TCTCTAAAGTTGACTCCTTCTCTGCTGTCTACCACAAATTAACTGGTAAAGAAGTTGTCT
TTGAATTCACTCAACAAACCGCTGAAAACTAAATAAAAAAGTAATTTTTTTAAACA
Length of 3' end seq. 586
Connected seq. ID SSE645P
Connected seq. 
>SSE645P.Seq
ACCAAAATGCTTAACAAGAAAATCATCAAACCAGCTGGTAAAGTTGCCACTGAATTCGAA
AACACTGTTGCCCAAGCATTAGTTGATTTGGAAAACAACAACGCCGAATTAAAAGACTTA
AAAGATTTATCAGTCTGTTCAGTCAAGGAAGTCGATGTTGCTGAATCCAAAAAAAGCTGT
TGTCATCTTTGTTCCATTCCGTCAACTCAAAAACTACAACAAAATCCAACAAAAATTAAC
CTATGAAGTTGAAAAGAAACTCGGTGGTAAACAAGTTATGTTCATTGCCCAAAGACGTAT
CATCCGTAAGCCAGCCTCAAACAACAAGATTAAAATGCAAAAGAGACCAATCTCCCGTAC
CATTAAAGCTGTCCACGATGCTATTCTCGATGATTTAGTATTCCCAAACACTATTGTTGG
TCGTCGTTTAAGATACAGATTAGATGGTTCAAAACTCCACAAAATCTACTTAGATCGTAA
AGAAATGTTATCAAACATCTCTAAAGTTGACTCCTTCTCTGCTGTCTACCACAAATTAAC
TGGTAAAGAAGTTGTCTTTGAATTCACTCAACAAACCGCTGAAAACTAAATAAAAAAGTA
ATTTTTTTAAACA----------AAACCAGCTGGTAAAGTTGCCACTGAATTCGAAAACA
CTGTTGCCCAAGCATTAGTTGATTTGGAAAACAACAACGCCGATTTAAAAGACTTTATAG
ATTTATCAGTCTGTTCAGTCAAGGAAGTCGATGTTGCTGAATCCTNTAAAAGCTGTTGTC
ATCTTTGTTCCATTCCGTCAACTCAAAAACTACAACAAAATCCNACTTTAATTAACCTAT
GAAGTTGAAAAGAAACTCGGTGGTAAACAAGTTATGTTCATTGCCCAAAGACGTATCATC
CGTAAGCCAGCCTCAAACAACAAGATTAAAATGCAAAAGAGACCAATCTCCCGTACCATT
AAAGCTGTCCACGATGCTATTCTCGATGATTTAGTATTCCCAAACACTATTGTTGGTCGT
CGTTTAAGATACAGATTAGATGGTTCAAAACTCCACAAAATCTACTTAGATCGTAAAGAA
ATGTTATCAAACATCTCTAAAGTTGACTCCTTCTCTGCTGTCTACCACAAATTAACTGGT
AAAGAAGTTGTCTTTGAATTCACTCAACAAACCGCTGAAAACTAAATAAAAAAGTAATTT
TTTTAAACA
Length of connected seq. 1199
Full length Seq ID SSE645E
Full length Seq. 
>SSE645E.Seq
ACCAAAATGCTTAACAAGAAAATCATCAAACCAGCTGGTAAAGTTGCCACTGAATTCGAA
AACACTGTTGCCCAAGCATTAGTTGATTTGGAAAACAACAACGCCGANTTAAAAGACTTN
ANAGATTTATCAGTCTGTTCAGTCAAGGAAGTCGATGTTGCTGAATCCNANAAAAGCTGT
TGTCATCTTTGTTCCATTCCGTCAACTCAAAAACTACAACAAAATCCAACNNNAATTAAC
CTATGAAGTTGAAAAGAAACTCGGTGGTAAACAAGTTATGTTCATTGCCCAAAGACGTAT
CATCCGTAAGCCAGCCTCAAACAACAAGATTAAAATGCAAAAGAGACCAATCTCCCGTAC
CATTAAAGCTGTCCACGATGCTATTCTCGATGATTTAGTATTCCCAAACACTATTGTTGG
TCGTCGTTTAAGATACAGATTAGATGGTTCAAAACTCCACAAAATCTACTTAGATCGTAA
AGAAATGTTATCAAACATCTCTAAAGTTGACTCCTTCTCTGCTGTCTACCACAAATTAAC
TGGTAAAGAAGTTGTCTTTGAATTCACTCAACAAACCGCTGAAAACTAAATAAAAAAGTA
ATTTTTTTAAACA
Length of full length seq. 613