SSE630
Library SS
(Link to library)
Clone ID SSE630
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16354-1
Original site URL
Representative seq. ID SSE630Z
(Link to Original site)
Representative DNA sequence
>SSE630 (SSE630Q) /CSM/SS/SSE6-B/SSE630Q.Seq.d/
XXXXXXXXXXGATTGTGCAATTACAAAAGGTGTAGAGGATATGTTAAGAAAATTTGATTC
AAATGGTGATGGTAATATTCCATTTGATGAAGCTGTAAAACGTTTGAAGGAAACCGGTTC
AAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGG
AATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCA
AAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGG
AAGGATCTNATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGC
TCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGT
AACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAAT
AATTTATTTTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAA
ATTTAAATAAATAAATAAATNAAAAATAATCTTTTAAAAATAAAAAAAAAAAA
sequence update 1997.10. 9
Translated Amino Acid sequence
---CAITKGVEDMLRKFDSNGDGNIPFDEAVKRLKETGSKDPLRAASSMFISLDKDKDGI
ISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRIXWDEVCNWVNKNNPDAIAP
LMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiyfsnsiiinqhl*fsflkkf
k*inkxkiif*k*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
---ivqlqkv*ric*enliqmvmvifhlmkl*nv*rkpvqkihyvlplqclfllirirme
lfq*krfmairlmllqrnckrqlttsvtts*kamtlirmegsxgmkyaig*iktiqmqll
hl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fifqiq*lliniynfhf*kn
lnk*inxk*sfknkkkk


Frame B:
---lcnykrcrgyvkki*fkw*w*ysi**scktfegnrfkrsitcclfnvyfs**g*gwn
yfnkrdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlgk*kqsrcncs
tydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnlffkfnny*stfiififkki
*ink*xknnllkikkk


Frame C:
---CAITKGVEDMLRKFDSNGDGNIPFDEAVKRLKETGSKDPLRAASSMFISLDKDKDGI
ISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRIXWDEVCNWVNKNNPDAIAP
LMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiyfsnsiiinqhl*fsflkkf
k*inkxkiif*k*kkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSE630 (SSE630Q) /CSM/SS/SSE6-B/SSE630Q.Seq.d/ 926 0.0
SSM673 (SSM673Q) /CSM/SS/SSM6-D/SSM673Q.Seq.d/ 910 0.0
SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/ 910 0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/ 910 0.0
SSM376 (SSM376Q) /CSM/SS/SSM3-D/SSM376Q.Seq.d/ 910 0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/ 910 0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/ 910 0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/ 910 0.0
SSK850 (SSK850Q) /CSM/SS/SSK8-C/SSK850Q.Seq.d/ 910 0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/ 910 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein. 910 0.0 1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence. 870 0.0 3
AC093212|AC093212.1 Homo sapiens chromosome 5 clone CTD-2035D2, WORKING DRAFT SEQUENCE, 20 unordered pieces. 42 0.15 3
AQ206386|AQ206386.1 HS_3240_A1_G03_T7 CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3240 Col=5 Row=M, genomic survey sequence. 42 0.18 2
AC114604|AC114604.5 Mus musculus chromosome 9 clone RP23-367L9 map 9, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces. 46 0.56 1
AC139135|AC139135.5 Mus musculus chromosome 9, clone RP24-360E17, complete sequence. 46 0.56 1
AE010589|AE010589.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 131 of 197 of the complete genome. 34 0.73 4
AC009866|AC009866.6 Homo sapiens chromosome 11, clone RP11-61E7, complete sequence. 34 0.74 6
AC147952|AC147952.1 Papio anubis clone RP41-96M13, WORKING DRAFT SEQUENCE, 4 unordered pieces. 38 1.2 5
AC095205|AC095205.5 Rattus norvegicus clone CH230-9K10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 36 1.6 8
dna update 2004. 2. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2; &S62881(S6288... 74 4e-12
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=... 67 4e-10
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA... 67 4e-10
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ... 67 5e-10
(Q54RF4) RecName: Full=Calcium-binding protein 4a; 67 5e-10
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=... 64 3e-09
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha; 56 6e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara... 53 7e-06
AF084406_1(AF084406|pid:none) Synthetic construct calmodulin mut... 52 1e-05
BC074397_1(BC074397|pid:none) Xenopus laevis MGC84373 protein, m... 52 1e-05
protein update 2009. 6.11
PSORT

psg: 0.75 gvh: 0.27 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSE630 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSE630Z
3' end seq.
>SSE630Z.Seq
----------GATTGTGCAATTACAAAAGGTGTAGAGGATATGTTAAGAAAATTTGATTC
AAATGGTGATGGTAATATTCCATTTGATGAAGCTGTAAAACGTTTGAAGGAAACCGGTTC
AAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGG
AATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCA
AAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGG
AAGGATCTNATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGC
TCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGT
AACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAAT
AATTTATTTTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAA
ATTTAAATAAATAAATAAATNAAAAATAATCTTTTAAAAATAAAAAAAAAAAA
Length of 3' end seq. 583
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -