SSE551
Library SS
(Link to library)
Clone ID SSE551
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12898-1
Original site URL
Representative seq. ID SSE551E
(Link to Original site)
Representative DNA sequence
>SSE551 (SSE551Q) /CSM/SS/SSE5-C/SSE551Q.Seq.d/
CAACTAATAAAAAGCCAATTAGAGTTTATGTTGATGGTTGTTTTGATTTAATGCATTTTG
GACATGCAAATGCATTAAGACAAGCAAGAGAATTAGGAGATATTTTAGTAGTTGGTGTAC
ATACAGATGAAGAAATTGCAAAAAATAAAGGTCCACCAGTTATGAATGAACAAGAAAGAT
ATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAGTTGCAGAAGGTGCACCTTATACTT
TAACTGAAGAATATTTGGATAGTTTAAACTGTGATTTTTGTGTACATGGTGAAGATATTT
CAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCATTAAAAAGAGTGGTAAATTTAGAT
TCATCAAACGTACTGAAGGTGTTTCAACAACCGAGTTGGTTGGTCGTATGTTATTATGCA
CCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAACCTCACCATTGGGAGGTGTCAATC
CAAACGTTTTACACAAACAATCACCATACACAAGTTTTCCTCCCAACCACCAGAAAGATC
GTCCAATTCTCAGAAGGTCGTTCACCAAAACCAAACGATAAAATCATTTATATGGATGGT
GGTTTCGATTTATTCCATGTAGGTCATACTGAGGCTTTGAAACAAGCAAGAGCACTCGGT
GACTATCTCATCGTTGGTGTTCATGATGATAGAGTAGTTCACGAACAAAAAAAAGGTAGC
AACTTCCCAATTATGAATTTACATGAACGTGTACTCTCTGTACTCTCATGTCGTTATGTC
GATGAAGTTGTCATTGGTGCTCCATTCAGTGTCACCAAAGATATGATTGACTCACTTCAC
ATCAATGTTGTCGTTCATGGTGATGATCAAGTTGTACTCGGTCCAGAAGGTGGTGTAGAT
CCATACAAACTCCCAAGAGAATTAGGTATTTACAAAGAAGTTAAACATACTGAAGGTCTC
ACTGCAACTGAAATCGTTAAAAGAATCATTGATAATAGACTTCAATATGAAGCTCGTAAT
CGTAAAAAAGAAGCAAAAGAAATTAATTTCATTGAACAATCAAATTAAAAAAAATTAAAA
AATAAAAAATAAAAATAAAACAAATAAAAAAAAAAATAGAAAAAAAATTTAATAAAATCT
TTAAGTGACCCATCAAATCGATCTTAACTTTTCTTTATGAAAGAGAAAAAAAA
sequence update 1999. 4. 6
Translated Amino Acid sequence
qliksqlefmlmvvli*cildmqmh*dkqen*eif**lvyiqmkklqkikvhql*mnkkd
ikqyvhvngqmklqkvhlil*lkniwiv*TVIFVYMVKIFQLVQMVKMFMKALKRVVNLD
SSNVLKVFQQPSWLVVCYYAPKTIFKMFQVSKPHHWEVSIQTFYTNNHHTQVFLPTTRKI
VQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVHDDRVVHEQKKGS
NFPIMNLHERVLSVLSCRYVDEVVIGAPFSVTKDMIDSLHINVVVHGDDQVVLGPEGGVD
PYKLPRELGIYKEVKHTEGLTATEIVKRIIDNRLQYEARNRKKEAKEINFIEQSN*kklk
nkk*k*nk*kkk*kknlikslsdpsnrs*lffmkekk


Translated Amino Acid sequence (All Frames)
Frame A:
qliksqlefmlmvvli*cildmqmh*dkqen*eif**lvyiqmkklqkikvhql*mnkkd
ikqyvhvngqmklqkvhlil*lkniwiv*TVIFVYMVKIFQLVQMVKMFMKALKRVVNLD
SSNVLKVFQQPSWLVVCYYAPKTIFKMFQVSKPHHWEVSIQTFYTNNHHTQVFLPTTRKI
VQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVHDDRVVHEQKKGS
NFPIMNLHERVLSVLSCRYVDEVVIGAPFSVTKDMIDSLHINVVVHGDDQVVLGPEGGVD
PYKLPRELGIYKEVKHTEGLTATEIVKRIIDNRLQYEARNRKKEAKEINFIEQSN*kklk
nkk*k*nk*kkk*kknlikslsdpsnrs*lffmkekk


Frame B:
n**kan*slc*wlf*fnafwtckciktskrirryfsswctyr*rnckk*rstsye*trki
*sstcm*mgr*scrrctlyfn*rifg*fkl*flctw*ryfswcrw*rcl*rh*kew*i*i
hqty*rcfnnrvgwsyvimhqrpsskcfr*anltigrcqskrftqtitihkfssqppers
snsqkvvhqnqtiksfiwmvvsiysm*vilrl*nkqehsvtisslvfmmie*ftnkkkva
tsql*iymnvyslyshvvmsmklslvlhsvspki*lthftsmlsfmvmiklysvqkvv*i
htnsqen*vftkklnilkvslqlkslkesliidfnmklvivkkkqkklislnnqikkn*k
iknknktnkkknrkki**nl*vthqidlnfsl*krkk


Frame C:
tnkkpirvyvdgcfdlmhfghanalrqarelgdilvvgvhtdeeiaknkgppvmneqery
kavrackwadevaegapytlteeyldslncdfcvhgedisvgadgkdvyegikksgkfrf
ikrtegvsttelvgrmllctkdhlqnvsgeqtsplggvnpnvlhkqspytsfppnhqkdr
pilrrsftktkr*nhlygwwfrfipcrsy*gfetskstr*lshrwcs***sssrtkkr*q
lpnyeft*tctlctlmslcr*schwcsiqchqryd*ltshqccrsw**ssctrsrrwcrs
iqtpkrirylqrs*ty*rshcn*nr*knh***tsi*ss*s*krskrn*fh*tiklkkikk
*kikikqikkkiekkfnkifk*piksiltflyerekk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSE551 (SSE551Q) /CSM/SS/SSE5-C/SSE551Q.Seq.d/ 2066 0.0
VFG365 (VFG365Q) /CSM/VF/VFG3-C/VFG365Q.Seq.d/ 2000 0.0
VFN722 (VFN722Q) /CSM/VF/VFN7-A/VFN722Q.Seq.d/ 1998 0.0
VFI626 (VFI626Q) /CSM/VF/VFI6-B/VFI626Q.Seq.d/ 1970 0.0
CFG421 (CFG421Q) /CSM/CF/CFG4-A/CFG421Q.Seq.d/ 1961 0.0
VFJ833 (VFJ833Q) /CSM/VF/VFJ8-B/VFJ833Q.Seq.d/ 1959 0.0
VFA266 (VFA266Q) /CSM/VF/VFA2-C/VFA266Q.Seq.d/ 1899 0.0
VFE318 (VFE318Q) /CSM/VF/VFE3-A/VFE318Q.Seq.d/ 1863 0.0
VFM413 (VFM413Q) /CSM/VF/VFM4-A/VFM413Q.Seq.d/ 1852 0.0
VFG517 (VFG517Q) /CSM/VF/VFG5-A/VFG517Q.Seq.d/ 1852 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG140383|BG140383.1 EST480825 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP17G1 5' sequence, mRNA sequence. 92 3e-16 3
BG131085|BG131085.1 EST463977 tomato crown gall Lycopersicon esculentum cDNA clone cTOE2D11 5' sequence, mRNA sequence. 92 5e-16 3
AW217896|AW217896.1 EST296610 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD1C15, mRNA sequence. 92 3e-15 2
AI778006|AI778006.1 EST258885 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES3N17, mRNA sequence. 92 4e-15 2
AW217261|AW217261.1 EST295975 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC89G22, mRNA sequence. 92 4e-15 2
AW219042|AW219042.1 EST301524 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX2H3, mRNA sequence. 92 4e-15 2
BG138134|BG138134.1 EST478576 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP8K18 5' sequence, mRNA sequence. 92 4e-15 2
BG642411|BG642411.1 EST355887 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD11C15 5' end, mRNA sequence. 92 4e-15 2
BG601025|BG601025.1 EST505920 cSTS Solanum tuberosum cDNA clone cSTS30D8 5' sequence, mRNA sequence. 90 2e-14 2
BG133537|BG133537.1 EST466525 tomato crown gall Lycopersicon esculentum cDNA clone cTOE13N15 5' sequence, mRNA sequence. 92 2e-14 1
dna update 2003. 8.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE014134_2379(AE014134|pid:none) Drosophila melanogaster chromos... 204 e-102
(Q5EA75) RecName: Full=Ethanolamine-phosphate cytidylyltransfera... 199 e-100
BT077764_1(BT077764|pid:none) Lepeophtheirus salmonis Pacific fo... 194 e-100
AM502250_130(AM502250|pid:none) Leishmania infantum chromosome 32. 200 4e-99
AK166319_1(AK166319|pid:none) Mus musculus mammary gland RCB-052... 198 4e-99
AL663030_9(AL663030|pid:none) Mouse DNA sequence from clone RP23... 198 6e-99
(Q55BZ4) RecName: Full=Ethanolamine-phosphate cytidylyltransfera... 363 6e-99
AM494969_98(AM494969|pid:none) Leishmania braziliensis chromosom... 198 2e-97
BC088018_1(BC088018|pid:none) Xenopus tropicalis phosphate cytid... 195 4e-97
CT005269_94(CT005269|pid:none) Leishmania major strain Friedlin,... 194 2e-96
protein update 2009. 7. 7
PSORT

psg: 0.86 gvh: 0.42 alm: 0.32 top: 0.67 tms: 0.00 mit: 0.30 mip: 0.15
nuc: 0.08 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for SSE551 is cyt

5' end seq. ID SSE551F
5' end seq.
>SSE551F.Seq
CAACTAATAAAAAGCCAATTAGAGTTTATGTTGATGGTTGTTTTGATTTAATGCATTTTG
GACATGCAAATGCATTAAGACAAGCAAGAGAATTAGGAGATATTTTAGTAGTTGGTGTAC
ATACAGATGAAGAAATTGCAAAAAATAAAGGTCCACCAGTTATGAATGAACAAGAAAGAT
ATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAGTTGCAGAAGGTGCACCTTATACTT
TAACTGAAGAATATTTGGATAGTTTAAACTGTGATTTTTGTGTACATGGTGAAGATATTT
CAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCATTAAAAAGAGTGGTAAATTTAGAT
TCATCAAACGTACTGAAGGTGTTTCAACAACCGAGTTGGTTGGTCGTATGTTATTATGCA
CCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAACCTCACCATTGGGAGGTGTCAATC
CAAACGTTTTACACAAACAATCACCATACACAAGTTTATCACATTTCCTCCCAACCACCA
GAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAAAACCAAACGATAAAATCATTTATA
TGGATGGTGGTTTCGATTTATTCCATGTAGGTCATACTGAGGCTTTGAAACAAGCAAGAG
CACTCGGTGACTATCTCATCGTTGGTGTTCATGATGATAGAGTAGTTCACGAACAAA---
-------
Length of 5' end seq. 717
3' end seq. ID SSE551Z
3' end seq.
>SSE551Z.Seq
----------TTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTCACC
AAAACCAAACGATAAAATCATTTATATGGATGGTGGTTTCGATTTATTCCATGTAGGTCA
TACTGAGGCTTTGAAACAAGCAAGAGCACTCGGTGACTATCTCATCGTTGGTGTTCATGA
TGATAGAGTAGTTCACGAACAAAAAGGTAGCAACTTCCCAATTATGAATTTACATGAACG
TGTACTCTCTGTACTCTCATGTCGTTATGTCGATGAAGTTGTCATTGGTGCTCCATTCAG
TGTCACCAAAGATATGATTGACTCACTTCACATCAATGTTGTCGTTCATGGTGATGATCA
AGTTGTACTCGGTCCAGAAGGTGGTGTAGATCCATACAAACTCCCAAGAGAATTAGGTAT
TTACAAAGAAGTTAAACATACTGAAGGTCTCACTGCAACTGAAATCGTTAAAAGAATCAT
TGATAATAGACTTCAATATGAAGCTCGTAATCGTAAAAAAGAAGCAAAAGAAATTAATTT
CATTGAACAATCAAATTAAAAAAAATTAAAAAATAAAAAATAAAAATAAAACAAATAAAA
AAAAAAATAGAAAAAAAATTTAATAAAATCTTTAAGTGACCCATCAAATCGATCTTAACT
TTTCTTTATGAAAGAGAAAAAAAATAAAATAAAAT
Length of 3' end seq. 685
Connected seq. ID SSE551P
Connected seq.
>SSE551P.Seq
CAACTAATAAAAAGCCAATTAGAGTTTATGTTGATGGTTGTTTTGATTTAATGCATTTTG
GACATGCAAATGCATTAAGACAAGCAAGAGAATTAGGAGATATTTTAGTAGTTGGTGTAC
ATACAGATGAAGAAATTGCAAAAAATAAAGGTCCACCAGTTATGAATGAACAAGAAAGAT
ATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAGTTGCAGAAGGTGCACCTTATACTT
TAACTGAAGAATATTTGGATAGTTTAAACTGTGATTTTTGTGTACATGGTGAAGATATTT
CAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCATTAAAAAGAGTGGTAAATTTAGAT
TCATCAAACGTACTGAAGGTGTTTCAACAACCGAGTTGGTTGGTCGTATGTTATTATGCA
CCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAACCTCACCATTGGGAGGTGTCAATC
CAAACGTTTTACACAAACAATCACCATACACAAGTTTATCACATTTCCTCCCAACCACCA
GAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAAAACCAAACGATAAAATCATTTATA
TGGATGGTGGTTTCGATTTATTCCATGTAGGTCATACTGAGGCTTTGAAACAAGCAAGAG
CACTCGGTGACTATCTCATCGTTGGTGTTCATGATGATAGAGTAGTTCACGAACAAA---
-------TTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAAA
ACCAAACGATAAAATCATTTATATGGATGGTGGTTTCGATTTATTCCATGTAGGTCATAC
TGAGGCTTTGAAACAAGCAAGAGCACTCGGTGACTATCTCATCGTTGGTGTTCATGATGA
TAGAGTAGTTCACGAACAAAAAGGTAGCAACTTCCCAATTATGAATTTACATGAACGTGT
ACTCTCTGTACTCTCATGTCGTTATGTCGATGAAGTTGTCATTGGTGCTCCATTCAGTGT
CACCAAAGATATGATTGACTCACTTCACATCAATGTTGTCGTTCATGGTGATGATCAAGT
TGTACTCGGTCCAGAAGGTGGTGTAGATCCATACAAACTCCCAAGAGAATTAGGTATTTA
CAAAGAAGTTAAACATACTGAAGGTCTCACTGCAACTGAAATCGTTAAAAGAATCATTGA
TAATAGACTTCAATATGAAGCTCGTAATCGTAAAAAAGAAGCAAAAGAAATTAATTTCAT
TGAACAATCAAATTAAAAAAAATTAAAAAATAAAAAATAAAAATAAAACAAATAAAAAAA
AAAATAGAAAAAAAATTTAATAAAATCTTTAAGTGACCCATCAAATCGATCTTAACTTTT
CTTTATGAAAGAGAAAAAAAATAAAATAAAAT
Length of connected seq. 1402
Full length Seq ID SSE551E
Full length Seq.
>SSE551E.Seq
CAACTAATAAAAAGCCAATTAGAGTTTATGTTGATGGTTGTTTTGATTTAATGCATTTTG
GACATGCAAATGCATTAAGACAAGCAAGAGAATTAGGAGATATTTTAGTAGTTGGTGTAC
ATACAGATGAAGAAATTGCAAAAAATAAAGGTCCACCAGTTATGAATGAACAAGAAAGAT
ATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAGTTGCAGAAGGTGCACCTTATACTT
TAACTGAAGAATATTTGGATAGTTTAAACTGTGATTTTTGTGTACATGGTGAAGATATTT
CAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCATTAAAAAGAGTGGTAAATTTAGAT
TCATCAAACGTACTGAAGGTGTTTCAACAACCGAGTTGGTTGGTCGTATGTTATTATGCA
CCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAACCTCACCATTGGGAGGTGTCAATC
CAAACGTTTTACACAAACAATCACCATACACAAGTTTTCCTCCCAACCACCAGAAAGATC
GTCCAATTCTCAGAAGGTCGTTCACCAAAACCAAACGATAAAATCATTTATATGGATGGT
GGTTTCGATTTATTCCATGTAGGTCATACTGAGGCTTTGAAACAAGCAAGAGCACTCGGT
GACTATCTCATCGTTGGTGTTCATGATGATAGAGTAGTTCACGAACAAAAAAAAGGTAGC
AACTTCCCAATTATGAATTTACATGAACGTGTACTCTCTGTACTCTCATGTCGTTATGTC
GATGAAGTTGTCATTGGTGCTCCATTCAGTGTCACCAAAGATATGATTGACTCACTTCAC
ATCAATGTTGTCGTTCATGGTGATGATCAAGTTGTACTCGGTCCAGAAGGTGGTGTAGAT
CCATACAAACTCCCAAGAGAATTAGGTATTTACAAAGAAGTTAAACATACTGAAGGTCTC
ACTGCAACTGAAATCGTTAAAAGAATCATTGATAATAGACTTCAATATGAAGCTCGTAAT
CGTAAAAAAGAAGCAAAAGAAATTAATTTCATTGAACAATCAAATTAAAAAAAATTAAAA
AATAAAAAATAAAAATAAAACAAATAAAAAAAAAAATAGAAAAAAAATTTAATAAAATCT
TTAAGTGACCCATCAAATCGATCTTAACTTTTCTTTATGAAAGAGAAAAAAAA
Length of full length seq. 1193