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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE546
Library SS
(Link to library)
Clone ID SSE546
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16354-1
Original site URL
Representative seq. ID SSE546E
(Link to Original site)
Representative DNA sequence 
>SSE546 (SSE546Q) /CSM/SS/SSE5-B/SSE546Q.Seq.d/
TGCAATTACAAAAGATGTAGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTAA
TATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACG
TGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAA
AGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAA
CATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGA
TGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGT
TGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACT
TCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAA
TTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAA
TAAATAAAAAATAATCTTTTAAAAATAAAAAAAAAAAAA
sequence update 1997.10. 2
Translated Amino Acid sequence 
AITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDKDGIISIK
EIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIAPLMIV
ENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkkfk*in
k*kiif*k*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
cnykrcrgyvkki*fkw*w*yyi**scktfegnrfkrsitcclfnvyfs**g*gwnyfnk
rdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlgk*kqsrcncstydc
*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*stfiififkki*ink
*iknnllkikkkk


Frame B:
AITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDKDGIISIK
EIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIAPLMIV
ENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkkfk*in
k*kiif*k*kkk


Frame C:
qlqkm*ric*enliqmvmvilhlmkl*nv*rkpvqkihyvlplqclfllirirmelfq*k
rfmairlmllqrnckrqlttsvtts*kamtlirmegshgmkyaig*iktiqmqllhl*ll
kislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*lliniynfhf*knlnk*i
nkk*sfknkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM673 (SSM673Q) /CSM/SS/SSM6-D/SSM673Q.Seq.d/                        957   0.0
SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/                        957   0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                        957   0.0
SSM376 (SSM376Q) /CSM/SS/SSM3-D/SSM376Q.Seq.d/                        957   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                        957   0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                        957   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                        957   0.0
SSK850 (SSK850Q) /CSM/SS/SSK8-C/SSK850Q.Seq.d/                        957   0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/                        957   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                        957   0.0
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.   957  0.0  1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   920  0.0  2
BQ875038|BQ875038.1 QGI6P19.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI6P19, mRNA sequence.    42  0.027  2
AC139135|AC139135.5 Mus musculus chromosome 9, clone RP24-360E17, complete sequence.    46  0.48  1
AC114604|AC114604.3 Mus musculus clone RP23-367L9, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  1.3  2
AL935172|AL935172.8 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-261J24.    38  1.9  3
BH898487|BH898487.1 MB61p8A12 Mission Bay (San Diego, CA) uncultured virus community uncultured marine virus genomic clone MB61p8A12, DNA sequence.    44  1.9  1
AL929113|AL929113.9 Mouse DNA sequence from clone RP23-424D23 on chromosome 2.    44  1.9  1
AC110201|AC110201.3 Mus musculus clone RP23-214G22, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44  1.9  1
AC012293|AC012293.15 Mus musculus chromosome 11 clone RP23-457K24 map 11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38  2.2  5
dna update 2003. 8.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    79   7e-14
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    69   7e-11
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    69   9e-11
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    69   9e-11
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    67   3e-10
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     67   3e-10
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha;             57   4e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    56   8e-07
EF523472_1(EF523472|pid:none) Synthetic construct putative aller...    55   1e-06
FN357341_31(FN357341|pid:none) Schistosoma mansoni genome sequen...    55   1e-06
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSE546 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSE546E
Full length Seq. 
>SSE546E.Seq
TGCAATTACAAAAGATGTAGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTAA
TATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACG
TGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAA
AGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAA
CATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGA
TGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGT
TGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACT
TCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAA
TTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAA
TAAATAAAAAATAATCTTTTAAAAATAAAAAAAAAAAAA
Length of full length seq. 579