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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE503
Library SS
(Link to library)
Clone ID SSE503
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U00406-1
Original site URL
Representative seq. ID SSE503P
(Link to Original site)
Representative DNA sequence 
>SSE503 (SSE503Q) /CSM/SS/SSE5-A/SSE503Q.Seq.d/
CGTTGTTGTATTATCTCATTCCTTTTATGTATTAATTATATATAAATATATATTAAAAAA
CACACACAATATATATTTTTTTTTTTTCGCATTGAAAAAAAAAAAAAAAAAAAGAAAAAA
TGAATATTCAAAACGACAAAGAAAGACTCTTAAATGGGAGTATTGATGAAATAGAAATTA
TTACAACCGATAACAATGAAAATGATACAATTAGAAATGATGATNTTCTTAAAAATTCTC
AACTAAGAGAACAACAACAACACCAACAAATTCAACAACAAATTCAACAACAAAAAAAAG
AATCTAGTTTAAGTACTATTGCATCAGTAATTGCATTTTATTTCTTTATTTCAATTTCAT
TAGTATTTTTAAATAAAATATTATTATCAGATTTTAAATTTGAATATCCATTATTCATAA
CATGGTATCAACAAATCATTTCATTTGTATCAATTTATATAATGACATCAATAAGTAAGA
GTGTACCAGCATTATCATTTTTACCAGAATTTGAATTTAAATCAGCAACTGCATCAAAGG
TGTTACCAGTAACTGCAGTTTTAACAGGTATGGTCATTTTTAATAXXXXXXXXXXGATGA
ACCATTATTATATTCAGGTACATTTTGGTTCTATATGACAGTTGCAGGTTTAATGGGTTA
TTTGATTAGTATCTCTGTTTTCATGCAAATTAAACATACAAGTCCATTAACAAATACCAT
TTCAGGTACTGTTAAGGCTTGTGTACAAACTATTTTAGCAGTTGTTTTTTGGGGTCATCC
AATTTCAACTCAAAATGCTGTTGGTATTTTATTAGTAATCGGTGGTAGTTTTTGGTATTC
AATGCAAAGATACTTTGAAATGAAAAAATAATTTTTATAAAATTAATATNATATAAATAA
ATCTAAAATAAATCTAAAATAAAATATAATTTTTGGAATTAAAATTTAAACAAAAAAAAA
AAAAAAAAAA
sequence update 1998. 9.14
Translated Amino Acid sequence 
llyylipfmy*lyiniy*kthtiyifffsh*KKKKKKEKMNIQNDKERLLNGSIDEIEII
TTDNNENDTIRNDDXLKNSQLREQQQHQQIQQQIQQQKKESSLSTIASVIAFYFFISISL
VFLNKILLSDFKFEYPLFITWYQQIISFVSIYIMTSISKSVPALSFLPEFEFKSATASKV
LPVTAVLTGMVIFN---

---DEPLLYSGTFWFYMTVAGLMGYLISISVFMQIKHTSPLTNTISGTVKACVQTILAVV
FWGHPISTQNAVGILLVIGGSFWYSMQRYFEMKK*fl*n*yxinkskinlk*niifgiki
*tkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
rcciisfllcinyi*iyikkhtqyiffffriekkkkkkkk*ifkttkkds*mgvlmk*kl
lqpitmkmiqlemmxflkiln*ennnntnkfnnkfnnkkknlv*vllhq*lhfislfqfh
*yf*ikyyyqilnlnihys*hginksfhlyqfi**hq*vrvyqhyhfyqnlnlnqqlhqr
cyq*lqf*qvwsfli---

---DEPLLYSGTFWFYMTVAGLMGYLISISVFMQIKHTSPLTNTISGTVKACVQTILAVV
FWGHPISTQNAVGILLVIGGSFWYSMQRYFEMKK*fl*n*yxinkskinlk*niifgiki
*tkkkkkk

Frame B:
vvvlshsfyvliiykyilknthniyffffalkkkkkkrkneyskrqrktlkwey**nrny
ynr*q*k*yn*k**xs*kfstkrttttptnsttnsttkkri*fkyycisncilflyfnfi
sifk*niiirf*i*isiihnmvstnhficinlyndink*ectsiiiftri*i*isncikg
vtsncsfnryghf*---

---mnhyyiqvhfgsi*qlqv*wvi*lvslfscklniqvh*qipfqvllrlvyklf*qlf
fgviqfqlkmllvfy**svvvfgiqckdtlk*knnfykinxi*inlk*i*nki*flelkf
kqkkkkk

Frame C:
llyylipfmy*lyiniy*kthtiyifffsh*KKKKKKEKMNIQNDKERLLNGSIDEIEII
TTDNNENDTIRNDDXLKNSQLREQQQHQQIQQQIQQQKKESSLSTIASVIAFYFFISISL
VFLNKILLSDFKFEYPLFITWYQQIISFVSIYIMTSISKSVPALSFLPEFEFKSATASKV
LPVTAVLTGMVIFN---

---*tiiifryilvlydscrfnglfd*ylcfhan*tyksinkyhfryc*glctnyfsscf
lgssnfnskccwyfisnrw*flvfnakil*nekiifiklixyk*i*nkskikynfwn*nl
nkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE503 (SSE503Q) /CSM/SS/SSE5-A/SSE503Q.Seq.d/                        854   0.0
AFI263 (AFI263Q) /CSM/AF/AFI2-C/AFI263Q.Seq.d/                        500   e-140
AFJ595 (AFJ595Q) /CSM/AF/AFJ5-D/AFJ595Q.Seq.d/                        494   e-138
VFL216 (VFL216Q) /CSM/VF/VFL2-A/VFL216Q.Seq.d/                         38   0.24
SSL568 (SSL568Q) /CSM/SS/SSL5-C/SSL568Q.Seq.d/                         38   0.24
VSK241 (VSK241Q) /CSM/VS/VSK2-B/VSK241Q.Seq.d/                         36   0.97
VSJ355 (VSJ355Q) /CSM/VS/VSJ3-C/VSJ355Q.Seq.d/                         34   3.8
VSG102 (VSG102Q) /CSM/VS/VSG1-A/VSG102Q.Seq.d/                         34   3.8
VSF524 (VSF524Q) /CSM/VS/VSF5-A/VSF524Q.Seq.d/                         34   3.8
VSE779 (VSE779Q) /CSM/VS/VSE7-D/VSE779Q.Seq.d/                         34   3.8
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   500   0.0    8
AC005308|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    38   0.056  11
AC145109|AC145109.12 Medicago truncatula clone mth2-25f20, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40   0.086  3
AC079613|AC079613.7 Homo sapiens clone RP11-325O22, complete sequence.    42   0.10   5
AC135078|AC135078.1 Homo sapiens chromosome 11 clone RP11-1160P17 map 11, LOW-PASS SEQUENCE SAMPLING.    40   0.11   3
AL157779|AL157779.6 Human DNA sequence from clone RP13-310B24 on chromosome  Xq21.31-21.33 Contains STSs and GSSs.    42   0.21   5
AP001175|AP001175.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-761N15, WORKING DRAFT SEQUENCE, 17 unordered pieces.    36   0.33   5
AL163246|AL163246.1 Homo sapiens genomic DNA, chromosome 21q, section 45/105.    34   0.46   9
AC007878|AC007878.2 Homo sapiens BAC clone RP11-236P2 from 2, complete sequence.    34   0.63   7
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    38   0.63   11
dna update 2004. 2. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115584_10(AC115584|pid:none) Dictyostelium discoideum chromoso...   265   2e-69
(Q550W6) RecName: Full=GDP-fucose transporter 1; AltName: Full=S...   265   2e-69
(A9UUB8) RecName: Full=GDP-fucose transporter 1; AltName: Full=S...    87   8e-16
(A7S1L6) RecName: Full=GDP-fucose transporter 1; AltName: Full=S...    87   8e-16
BC086750_1(BC086750|pid:none) Danio rerio zgc:101867, mRNA (cDNA...    82   3e-14
BC154758_1(BC154758|pid:none) Danio rerio zgc:101867, mRNA (cDNA...    82   3e-14
(A6QM03) RecName: Full=GDP-fucose transporter 1; AltName: Full=S...    76   1e-12
AK002182_1(AK002182|pid:none) Homo sapiens cDNA FLJ11320 fis, cl...    75   3e-12
(Q96A29) RecName: Full=GDP-fucose transporter 1; AltName: Full=S...    75   3e-12
AK040454_1(AK040454|pid:none) Mus musculus 0 day neonate thymus ...    75   3e-12
protein update 2009. 6.11
PSORT 

 psg: 0.41  gvh: 0.22  alm: 0.22  top: 0.43  tms: 0.27  mit: 0.17  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: plasma membrane
	 32.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: nuclear

>> prediction for SSE503 is pla
5' end seq. ID SSE503F
5' end seq. 
>SSE503F.Seq
CGTTGTTGTATTATCTCATTCCTTTTATGTATTAATTATATATAAATATATATTAAAAAA
CACACACAATATATATTTTTTTTTTTTCGCATTGAAAAAAAAAAAAAAAAAAAGAAAAAA
TGAATATTCAAAACGACAAAGAAAGACTCTTAAATGGGAGTATTGATGAAATAGAAATTA
TTACAACCGATAACAATGAAAATGATACAATTAGAAATGATGATNTTCTTAAAAATTCTC
AACTAAGAGAACAACAACAACACCAACAAATTCAACAACAAATTCAACAACAAAAAAAAG
AATCTAGTTTAAGTACTATTGCATCAGTAATTGCATTTTATTTCTTTATTTCAATTTCAT
TAGTATTTTTAAATAAAATATTATTATCAGATTTTAAATTTGAATATCCATTATTCATAA
CATGGTATCAACAAATCATTTCATTTGTATCAATTTATATAATGACATCAATAAGTAAGA
GTGTACCAGCATTATCATTTTTACCAGAATTTGAATTTAAATCAGCAACTGCATCAAAGG
TGTTACCAGTAACTGCAGTTTTAACAGGTATGGTCATTTTTAATA----------
Length of 5' end seq. 585
3' end seq. ID SSE503Z
3' end seq. 
>SSE503Z.Seq
----------GATGAACCATTATTATATTCAGGTACATTTTGGTTCTATATGACAGTTGC
AGGTTTAATGGGTTATTTGATTAGTATCTCTGTTTTCATGCAAATTAAACATACAAGTCC
ATTAACAAATACCATTTCAGGTACTGTTAAGGCTTGTGTACAAACTATTTTAGCAGTTGT
TTTTTGGGGTCATCCAATTTCAACTCAAAATGCTGTTGGTATTTTATTAGTAATCGGTGG
TAGTTTTTGGTATTCAATGCAAAGATACTTTGAAATGAAAAAATAATTTTTATAAAATTA
ATATNATATAAATAAATCTAAAATAAATCTAAAATAAAATATAATTTTTGGAATTAAAAT
TTAAACAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 375
Connected seq. ID SSE503P
Connected seq. 
>SSE503P.Seq
CGTTGTTGTATTATCTCATTCCTTTTATGTATTAATTATATATAAATATATATTAAAAAA
CACACACAATATATATTTTTTTTTTTTCGCATTGAAAAAAAAAAAAAAAAAAAGAAAAAA
TGAATATTCAAAACGACAAAGAAAGACTCTTAAATGGGAGTATTGATGAAATAGAAATTA
TTACAACCGATAACAATGAAAATGATACAATTAGAAATGATGATNTTCTTAAAAATTCTC
AACTAAGAGAACAACAACAACACCAACAAATTCAACAACAAATTCAACAACAAAAAAAAG
AATCTAGTTTAAGTACTATTGCATCAGTAATTGCATTTTATTTCTTTATTTCAATTTCAT
TAGTATTTTTAAATAAAATATTATTATCAGATTTTAAATTTGAATATCCATTATTCATAA
CATGGTATCAACAAATCATTTCATTTGTATCAATTTATATAATGACATCAATAAGTAAGA
GTGTACCAGCATTATCATTTTTACCAGAATTTGAATTTAAATCAGCAACTGCATCAAAGG
TGTTACCAGTAACTGCAGTTTTAACAGGTATGGTCATTTTTAATA----------GATGA
ACCATTATTATATTCAGGTACATTTTGGTTCTATATGACAGTTGCAGGTTTAATGGGTTA
TTTGATTAGTATCTCTGTTTTCATGCAAATTAAACATACAAGTCCATTAACAAATACCAT
TTCAGGTACTGTTAAGGCTTGTGTACAAACTATTTTAGCAGTTGTTTTTTGGGGTCATCC
AATTTCAACTCAAAATGCTGTTGGTATTTTATTAGTAATCGGTGGTAGTTTTTGGTATTC
AATGCAAAGATACTTTGAAATGAAAAAATAATTTTTATAAAATTAATATNATATAAATAA
ATCTAAAATAAATCTAAAATAAAATATAATTTTTGGAATTAAAATTTAAACAAAAAAAAA
AAAAAAAAAA
Length of connected seq. 960
Full length Seq ID -
Full length Seq. -
Length of full length seq. -