SSE465
Library SS
(Link to library)
Clone ID SSE465
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SSE465Z
(Link to Original site)
Representative DNA sequence
>SSE465 (SSE465Q) /CSM/SS/SSE4-C/SSE465Q.Seq.d/
XXXXXXXXXXTTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTTGATATTGGTGC
AACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGC
TCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATAC
ATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGT
TGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAAC
CATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAG
TGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGG
TATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGT
TAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATC
TATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCTA
ATTGTAT
sequence update 1998. 5. 2
Translated Amino Acid sequence
---LKLVQHVYSINLDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTS
GIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSV
RPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi
**pemffy*knknknnnf*ly


Translated Amino Acid sequence (All Frames)
Frame A:
---c*nwfnmfiq*ililvqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsih
lvsimsqnvlqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihliv
ldqrqiiigslkihgvphgv*kvtf*cqrieriivvlhqlalihlprfmvpk*igecldl
ssnlkcfsikkikikiiisnc


Frame B:
---aetgstclfnks*ywcnh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyi
wyll*akmfsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c
*tkgk*lldr*kfmgylmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*envwiy
lvt*nvfllkk*k*k**fliv


Frame C:
---LKLVQHVYSINLDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTS
GIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSV
RPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi
**pemffy*knknknnnf*ly


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSE465 (SSE465Q) /CSM/SS/SSE4-C/SSE465Q.Seq.d/ 1108 0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/ 1090 0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/ 1090 0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/ 1090 0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/ 1090 0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/ 1090 0.0
SSI550 (SSI550Q) /CSM/SS/SSI5-C/SSI550Q.Seq.d/ 1090 0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/ 1090 0.0
SSG528 (SSG528Q) /CSM/SS/SSG5-B/SSG528Q.Seq.d/ 1090 0.0
SSG365 (SSG365Q) /CSM/SS/SSG3-C/SSG365Q.Seq.d/ 1090 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 1033 0.0 3
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 771 0.0 5
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read. 478 e-163 3
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 88 8e-37 5
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 88 3e-29 5
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 76 7e-29 3
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 82 1e-11 1
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds. 56 6e-08 2
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds. 46 6e-07 3
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head. 50 5e-06 2
dna update 2004. 2. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 293 3e-80
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 155 1e-36
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 155 1e-36
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ... 139 8e-32
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ... 139 8e-32
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ... 138 1e-31
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei... 138 1e-31
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083... 137 2e-31
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 137 2e-31
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae... 136 5e-31
protein update 2009. 6.11
PSORT

psg: 0.79 gvh: 0.39 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SSE465 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSE465Z
3' end seq.
>SSE465Z.Seq
----------TTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTTGATATTGGTGC
AACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGC
TCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATAC
ATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGT
TGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAAC
CATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAG
TGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGG
TATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGT
TAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATC
TATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCTA
ATTGTAT
Length of 3' end seq. 597
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -